Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ORF34_RS08265 Genome accession   NZ_CP112873
Coordinates   1570228..1570677 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain O4     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565228..1575677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORF34_RS08225 (ORF34_08225) ctaE 1565245..1565868 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  ORF34_RS08230 (ORF34_08230) ctaF 1565871..1566203 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ORF34_RS08235 (ORF34_08235) ctaG 1566230..1567123 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  ORF34_RS08240 (ORF34_08240) ylbA 1567155..1567517 (-) 363 WP_003232238.1 YugN family protein -
  ORF34_RS08245 (ORF34_08245) ylbB 1567657..1568103 (+) 447 WP_003221362.1 CBS domain-containing protein -
  ORF34_RS08250 (ORF34_08250) ylbC 1568187..1569227 (+) 1041 WP_003245434.1 CAP domain-containing protein -
  ORF34_RS08255 (ORF34_08255) ylbD 1569459..1569857 (+) 399 WP_003232233.1 YlbD family protein -
  ORF34_RS08260 (ORF34_08260) ylbE 1569873..1570112 (+) 240 WP_003232231.1 YlbE-like family protein -
  ORF34_RS08265 (ORF34_08265) ylbF 1570228..1570677 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ORF34_RS08270 (ORF34_08270) ylbG 1570732..1571004 (+) 273 WP_009967171.1 YlbG family protein -
  ORF34_RS08275 (ORF34_08275) rsmD 1571327..1571881 (+) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ORF34_RS08280 (ORF34_08280) coaD 1571886..1572371 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ORF34_RS08285 (ORF34_08285) spoVV 1572382..1573608 (-) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  ORF34_RS08290 (ORF34_08290) ylbK 1573789..1574571 (+) 783 WP_003232221.1 patatin family protein -
  ORF34_RS08295 (ORF34_08295) sepM 1574573..1575598 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=686971 ORF34_RS08265 WP_003221370.1 1570228..1570677(+) (ylbF) [Bacillus subtilis strain O4]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=686971 ORF34_RS08265 WP_003221370.1 1570228..1570677(+) (ylbF) [Bacillus subtilis strain O4]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1