Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA50_RS26980 Genome accession   NZ_CP111034
Coordinates   5834512..5835036 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PALA50     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5829512..5840036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA50_RS26965 (PALA50_05347) aroB 5830628..5831734 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  PALA50_RS26970 (PALA50_05348) aroK 5831784..5832302 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA50_RS26975 (PALA50_05349) pilQ 5832314..5834458 (-) 2145 WP_014603377.1 type 4a pilus secretin PilQ Machinery gene
  PALA50_RS26980 (PALA50_05350) comL/pilP 5834512..5835036 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA50_RS26985 (PALA50_05351) pilO 5835033..5835656 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA50_RS26990 (PALA50_05352) pilN 5835653..5836213 (-) 561 WP_256969965.1 type 4a pilus biogenesis protein PilN -
  PALA50_RS26995 (PALA50_05353) pilM 5836248..5837312 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA50_RS27000 (PALA50_05354) - 5837497..5839965 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=686502 PALA50_RS26980 WP_003095836.1 5834512..5835036(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA50]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=686502 PALA50_RS26980 WP_003095836.1 5834512..5835036(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA50]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362