Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA50_RS24175 Genome accession   NZ_CP111034
Coordinates   5216639..5217064 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PALA50     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5211639..5222064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA50_RS24160 (PALA50_04799) pilX 5212203..5212790 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA50_RS24165 (PALA50_04800) pilY1 5212802..5216293 (+) 3492 WP_023122363.1 type 4a pilus biogenesis protein PilY1 -
  PALA50_RS24170 (PALA50_04801) pilY2 5216295..5216642 (+) 348 WP_012614546.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA50_RS24175 (PALA50_04802) comF 5216639..5217064 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PALA50_RS24180 (PALA50_04803) ispH 5217111..5218055 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA50_RS24185 (PALA50_04804) fkpB 5218141..5218581 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA50_RS24190 (PALA50_04805) lspA 5218574..5219083 (-) 510 WP_003094728.1 signal peptidase II -
  PALA50_RS24195 (PALA50_04806) ileS 5219076..5221907 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=686496 PALA50_RS24175 WP_003094721.1 5216639..5217064(+) (comF) [Pseudomonas aeruginosa strain PALA50]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=686496 PALA50_RS24175 WP_003094721.1 5216639..5217064(+) (comF) [Pseudomonas aeruginosa strain PALA50]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383