Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA54_RS29070 Genome accession   NZ_CP111032
Coordinates   6208795..6209319 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain PALA54     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6203795..6214319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA54_RS29055 (PALA54_05744) aroB 6204923..6206029 (-) 1107 WP_009314395.1 3-dehydroquinate synthase -
  PALA54_RS29060 (PALA54_05745) aroK 6206079..6206597 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA54_RS29065 (PALA54_05746) pilQ 6206609..6208741 (-) 2133 WP_003141780.1 type 4a pilus secretin PilQ Machinery gene
  PALA54_RS29070 (PALA54_05747) comL/pilP 6208795..6209319 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA54_RS29075 (PALA54_05748) pilO 6209316..6209939 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA54_RS29080 (PALA54_05749) pilN 6209936..6210532 (-) 597 WP_043083103.1 type 4a pilus biogenesis protein PilN -
  PALA54_RS29085 (PALA54_05750) pilM 6210532..6211596 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA54_RS29090 (PALA54_05751) - 6211781..6214252 (+) 2472 WP_043088268.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=686401 PALA54_RS29070 WP_003116136.1 6208795..6209319(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA54]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=686401 PALA54_RS29070 WP_003116136.1 6208795..6209319(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA54]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAC
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCAGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GACGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362