Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA38_RS02600 Genome accession   NZ_CP111030
Coordinates   563365..564096 (-) Length   243 a.a.
NCBI ID   WP_043085492.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA38     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 558365..569096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA38_RS02575 (PALA38_00504) - 558837..559352 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PALA38_RS02580 (PALA38_00505) rarD 560042..560938 (-) 897 WP_003103301.1 EamA family transporter RarD -
  PALA38_RS02585 (PALA38_00506) - 561141..562115 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  PALA38_RS02590 (PALA38_00507) - 562177..562935 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  PALA38_RS02595 (PALA38_00508) - 563003..563323 (-) 321 WP_031686343.1 YfiM family lipoprotein -
  PALA38_RS02600 (PALA38_00509) comF 563365..564096 (-) 732 WP_043085492.1 ComF family protein Machinery gene
  PALA38_RS02605 (PALA38_00510) - 564235..564528 (-) 294 WP_003084806.1 hypothetical protein -
  PALA38_RS02610 (PALA38_00511) - 564582..565508 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  PALA38_RS02615 (PALA38_00512) - 565626..566384 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  PALA38_RS02620 (PALA38_00513) - 566461..566709 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PALA38_RS02625 (PALA38_00514) - 566720..568096 (+) 1377 WP_023126932.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA38_RS02630 (PALA38_00515) - 568098..568976 (+) 879 WP_023092335.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27192.78 Da        Isoelectric Point: 10.3093

>NTDB_id=686230 PALA38_RS02600 WP_043085492.1 563365..564096(-) (comF) [Pseudomonas aeruginosa strain PALA38]
MSFPLRPLTRWLLPPPACLLCAACSDQPPRPLCRACAADLPWSRQQCRRCALPLPLPLDGQVCGECLRRPPAYEQAIAPW
RYAFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRC
DPHSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECISRLLRRAGAARVDVYCLARTP
KPG

Nucleotide


Download         Length: 732 bp        

>NTDB_id=686230 PALA38_RS02600 WP_043085492.1 563365..564096(-) (comF) [Pseudomonas aeruginosa strain PALA38]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCTGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCCCTGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGG
CGCTACGCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGA
GTTGCTGGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGC
CACGGCGCGAACGTCGGCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGC
GATCCGCACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCG
CCACGCCTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGG
CCACCGCCGAGTGCATTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCG
AAGCCCGGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(141-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.272

100

0.383