Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CCX78_RS01020 Genome accession   NZ_AP017931
Coordinates   197148..197708 (+) Length   186 a.a.
NCBI ID   WP_056947508.1    Uniprot ID   A0AAX0VCZ0
Organism   Latilactobacillus sakei strain LK-145     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 192148..202708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS01000 (LASAK_00187) cysS 193849..195255 (+) 1407 WP_096584178.1 cysteine--tRNA ligase -
  CCX78_RS01005 (LASAK_00188) - 195252..195659 (+) 408 WP_004265086.1 Mini-ribonuclease 3 -
  CCX78_RS01010 (LASAK_00189) rlmB 195646..196533 (+) 888 WP_082267747.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CCX78_RS01015 (LASAK_00190) - 196537..197070 (+) 534 WP_096584181.1 NYN domain-containing protein -
  CCX78_RS01020 (LASAK_00191) sigH 197148..197708 (+) 561 WP_056947508.1 sigma-70 family RNA polymerase sigma factor Regulator
  CCX78_RS01025 (LASAK_00192) rpmG 197834..197983 (+) 150 WP_011375366.1 50S ribosomal protein L33 -
  CCX78_RS01030 (LASAK_00193) secE 197993..198172 (+) 180 WP_011375365.1 preprotein translocase subunit SecE -
  CCX78_RS01035 (LASAK_00194) nusG 198270..198818 (+) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  CCX78_RS01040 (LASAK_00195) - 199276..200139 (+) 864 WP_231952381.1 alpha/beta fold hydrolase -
  CCX78_RS01045 (LASAK_00196) rplK 200265..200690 (+) 426 WP_004270859.1 50S ribosomal protein L11 -
  CCX78_RS01050 (LASAK_00197) rplA 200789..201478 (+) 690 WP_004270847.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22089.28 Da        Isoelectric Point: 7.4752

>NTDB_id=68579 CCX78_RS01020 WP_056947508.1 197148..197708(+) (sigH) [Latilactobacillus sakei strain LK-145]
MEQTKRDKMLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=68579 CCX78_RS01020 WP_056947508.1 197148..197708(+) (sigH) [Latilactobacillus sakei strain LK-145]
ATGGAACAAACAAAGCGCGACAAAATGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGACCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGCGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGATCAGTTGAAACGGGGCCAATCAAGGTGTCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

96.774

100

0.968

Multiple sequence alignment