Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   LEUCM_RS03890 Genome accession   NZ_AP017929
Coordinates   781833..782393 (+) Length   186 a.a.
NCBI ID   WP_016265666.1    Uniprot ID   A0A9N7J0X6
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 776833..787393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS03870 (LACBS_00755) cysS 778534..779940 (+) 1407 WP_016265668.1 cysteine--tRNA ligase -
  LEUCM_RS03875 (LACBS_00756) - 779937..780344 (+) 408 WP_025015968.1 Mini-ribonuclease 3 -
  LEUCM_RS03880 (LACBS_00757) rlmB 780331..781218 (+) 888 WP_011375369.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  LEUCM_RS03885 (LACBS_00758) - 781222..781755 (+) 534 WP_016265667.1 NYN domain-containing protein -
  LEUCM_RS03890 (LACBS_00759) sigH 781833..782393 (+) 561 WP_016265666.1 sigma-70 family RNA polymerase sigma factor Regulator
  LEUCM_RS03895 (LACBS_00760) rpmG 782519..782668 (+) 150 WP_011375366.1 50S ribosomal protein L33 -
  LEUCM_RS03900 (LACBS_00761) secE 782678..782857 (+) 180 WP_011375365.1 preprotein translocase subunit SecE -
  LEUCM_RS03905 (LACBS_00762) nusG 782955..783503 (+) 549 WP_011375364.1 transcription termination/antitermination protein NusG -
  LEUCM_RS03910 (LACBS_00763) - 783910..784767 (+) 858 WP_016265664.1 alpha/beta fold hydrolase -
  LEUCM_RS03915 (LACBS_00764) rplK 784893..785318 (+) 426 WP_004270859.1 50S ribosomal protein L11 -
  LEUCM_RS03920 (LACBS_00765) rplA 785417..786106 (+) 690 WP_016265663.1 50S ribosomal protein L1 -

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 22072.18 Da        Isoelectric Point: 6.6722

>NTDB_id=68551 LEUCM_RS03890 WP_016265666.1 781833..782393(+) (sigH) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MEQTKRDELLIAAVAQNDSQALDVLFKAYLPMVYHTVAPYYIRLFDEDDWLQEARIVCYETCQCYDCQKGKSFGSFYKLR
FKNHILNLLRRELAQKRRGDRQAVLIAERPEHDAISEDTMTYYQSQFELRCYLETLSPFELVSFRVLTGQLSIDEACCQL
DCTIDQLKRGQSRCQTKLKRYYQENR

Nucleotide


Download         Length: 561 bp        

>NTDB_id=68551 LEUCM_RS03890 WP_016265666.1 781833..782393(+) (sigH) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGGAACAAACAAAGCGCGACGAACTGCTGATTGCAGCAGTGGCTCAGAATGATTCACAAGCACTAGATGTATTATTCAA
GGCGTATTTGCCGATGGTGTATCACACCGTGGCGCCATATTATATCCGGTTATTCGATGAAGACGATTGGTTACAAGAAG
CCCGGATTGTTTGTTACGAAACTTGCCAATGTTACGATTGTCAAAAAGGCAAAAGTTTTGGGAGTTTCTATAAATTACGG
TTTAAAAACCACATTTTAAATTTACTACGACGAGAACTCGCACAAAAACGGCGAGGTGATCGTCAGGCAGTATTGATTGC
GGAGCGGCCGGAACACGACGCGATTTCAGAAGATACGATGACTTACTATCAATCGCAGTTTGAATTGAGATGTTATCTTG
AAACGCTGTCGCCTTTTGAATTAGTGTCGTTTCGGGTGCTGACCGGGCAGCTTTCAATTGATGAAGCTTGTTGCCAACTC
GATTGTACGATTGACCAGTTGAAACGAGGCCAATCAAGGTGCCAGACTAAGTTAAAACGGTATTATCAAGAGAATCGTTA
A

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(25-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

97.849

100

0.978

Multiple sequence alignment