Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   SLV14N_RS16450 Genome accession   NZ_CP110836
Coordinates   3844237..3846129 (-) Length   630 a.a.
NCBI ID   WP_263273179.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-4 4N24     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3839237..3851129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SLV14N_RS16435 (SLV14N_003297) - 3839956..3841062 (-) 1107 WP_263269852.1 S1C family serine protease -
  SLV14N_RS16440 (SLV14N_003298) - 3841180..3842205 (-) 1026 WP_026169660.1 LacI family DNA-binding transcriptional regulator -
  SLV14N_RS16445 (SLV14N_003299) - 3842230..3843057 (-) 828 WP_208681604.1 response regulator transcription factor -
  SLV14N_RS16450 (SLV14N_003300) rcrQ 3844237..3846129 (-) 1893 WP_263273179.1 ABC transporter ATP-binding protein Regulator
  SLV14N_RS16455 (SLV14N_003301) rcrP 3846243..3847976 (-) 1734 WP_263269856.1 ABC transporter ATP-binding protein Regulator
  SLV14N_RS16460 (SLV14N_003302) - 3848184..3848429 (+) 246 WP_018089808.1 MoaD/ThiS family protein -
  SLV14N_RS16465 (SLV14N_003303) - 3848440..3849669 (+) 1230 WP_263269859.1 hypothetical protein -
  SLV14N_RS16470 (SLV14N_003304) - 3849856..3850557 (+) 702 WP_208681607.1 DUF2993 domain-containing protein -
  SLV14N_RS38985 - 3850784..3850891 (+) 108 WP_350252853.1 putative leader peptide -

Sequence

Protein


Download         Length: 630 a.a.        Molecular weight: 67925.44 Da        Isoelectric Point: 6.4441

>NTDB_id=685444 SLV14N_RS16450 WP_263273179.1 3844237..3846129(-) (rcrQ) [Streptomyces sp. Je 1-4 4N24]
MGGQPTEKSMDFKGSGKRLLAQMRPERGIMSLALALGALSVALTVVGPKVLGHATDLIMSGIIGRQLPDGLTRAQAAGQL
RAHGQDGLADMIGTMPVVPGHGIDFGAVGQVLLWVTLIYAAASLFGFVQARIATRVVQRAVFRMREQVEEKLARLPLSYF
DKQQRGEVLSRATNDIDNIQQTLQQTLSQIVASLLTIVGVLAMMFWISPLLALVALITVPVSVVVATKVGKRAQPQFVQQ
WKTTGKLNAHIEEMYTGHSLVKVFGRQRESAELFREQNEALYAAGFKAQFISGIIQPAMMFIGNLNYVLVAVVGGLRVAS
GALSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERVFELLDATEQDPDPVRPARPERIEGRVEFEDVSFRYAPD
KPLIEDLALAVHPGQTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAAMSREELRAHIGMVLQDTWLFGGTIAE
NIAYGAPAGTPMDKIVAAARATHVDRFVRTLPDGYDTVLDDEGSNVSVGEKQLITIARAFLAEPAILVLDEATSSVDTRT
EVLIQHAMAQLRTGRTSFVIAHRLSTIRDADVILVMENGAIVEQGPHDALLAANGAYARLYAAQFAEPVA

Nucleotide


Download         Length: 1893 bp        

>NTDB_id=685444 SLV14N_RS16450 WP_263273179.1 3844237..3846129(-) (rcrQ) [Streptomyces sp. Je 1-4 4N24]
ATGGGCGGCCAGCCCACCGAGAAGTCGATGGACTTCAAGGGCTCCGGCAAACGGCTGCTGGCCCAGATGCGGCCGGAGCG
AGGCATCATGAGCCTCGCCCTGGCCCTGGGCGCACTGAGCGTGGCCCTGACGGTCGTCGGCCCCAAGGTCCTCGGCCACG
CCACCGACCTGATCATGTCCGGCATCATCGGCCGGCAACTGCCCGACGGGCTCACCAGGGCCCAGGCCGCCGGCCAACTC
CGTGCCCACGGCCAGGACGGGCTCGCCGACATGATCGGCACGATGCCGGTCGTCCCCGGCCACGGCATCGACTTCGGTGC
CGTCGGCCAGGTGCTGCTCTGGGTCACCCTGATCTACGCGGCCGCCTCGCTGTTCGGCTTCGTCCAGGCCAGGATCGCCA
CCCGGGTGGTCCAGCGGGCCGTCTTCCGGATGCGCGAACAGGTCGAGGAGAAGCTGGCCCGGCTGCCGCTGAGCTACTTC
GACAAGCAGCAGCGCGGCGAGGTCCTCTCCCGGGCCACCAACGACATCGACAACATCCAGCAGACGCTCCAGCAGACCCT
CAGCCAGATCGTCGCCTCGCTGCTGACCATCGTCGGCGTGCTCGCCATGATGTTCTGGATCTCCCCGCTGCTGGCCCTGG
TCGCCCTGATCACGGTCCCGGTCTCGGTCGTCGTCGCCACCAAGGTCGGCAAGCGCGCCCAGCCGCAGTTCGTCCAGCAG
TGGAAGACCACCGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACAGCCTGGTGAAGGTCTTCGGCCGGCA
GCGCGAGTCCGCCGAACTCTTCCGCGAACAGAACGAGGCCCTCTACGCCGCCGGGTTCAAGGCCCAGTTCATCTCCGGGA
TCATCCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGTCCTGGTGGCGGTGGTCGGCGGCCTCCGCGTCGCCTCC
GGGGCCCTCTCCATCGGCGACGTCCAGGCCTTCATCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCACCCAGGTCGCCTC
GATGGCCAACCTCGTCCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCACGGAGCAGGACCCCG
ACCCCGTACGGCCGGCCCGCCCCGAACGCATCGAGGGCCGGGTCGAGTTCGAGGACGTCTCCTTCCGCTACGCACCGGAC
AAGCCGCTCATCGAGGACCTCGCGCTGGCCGTCCACCCCGGCCAGACGGTGGCGATCGTCGGCCCGACCGGCGCCGGCAA
GACCACGCTCGTCAACCTCCTGATGCGCTTCTACGAGGTGAGCGGCGGCCGGATCACCCTCGACGGCGTCGACATCGCCG
CCATGTCCCGCGAGGAACTGCGCGCGCACATCGGCATGGTCCTCCAGGACACCTGGCTCTTCGGCGGCACGATCGCCGAG
AACATCGCCTACGGAGCCCCCGCGGGCACCCCGATGGACAAGATCGTGGCGGCGGCCAGGGCCACCCATGTCGACCGCTT
CGTGCGGACCCTGCCGGACGGCTACGACACGGTGCTCGACGACGAGGGCAGCAATGTCTCCGTCGGCGAGAAACAGCTGA
TCACCATCGCCCGCGCCTTCCTCGCCGAACCGGCCATCCTCGTCCTGGACGAGGCCACCAGCTCGGTCGACACCCGCACC
GAGGTGCTCATCCAGCACGCGATGGCCCAGCTCCGCACCGGCCGCACCAGCTTCGTCATCGCCCACCGCCTCTCCACGAT
CCGCGACGCGGACGTCATCCTCGTCATGGAAAACGGTGCGATCGTGGAACAGGGGCCCCACGATGCGCTGTTGGCCGCCA
ATGGCGCGTACGCGCGTTTGTACGCGGCCCAGTTCGCGGAGCCCGTGGCGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(405-554)

ABC transporter transmembrane region (ABC_membrane)

(48-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

42.122

98.73

0.416