Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   OOZ27_RS08735 Genome accession   NZ_CP110634
Coordinates   1617104..1617553 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain MG-1     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1612104..1622553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOZ27_RS08695 (OOZ27_08695) ctaE 1612120..1612743 (+) 624 WP_015715836.1 cytochrome c oxidase subunit III -
  OOZ27_RS08700 (OOZ27_08700) ctaF 1612746..1613078 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  OOZ27_RS08705 (OOZ27_08705) ctaG 1613106..1613999 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  OOZ27_RS08710 (OOZ27_08710) ylbA 1614031..1614393 (-) 363 WP_003232238.1 YugN family protein -
  OOZ27_RS08715 (OOZ27_08715) ylbB 1614533..1614979 (+) 447 WP_003221362.1 CBS domain-containing protein -
  OOZ27_RS08720 (OOZ27_08720) ylbC 1615063..1616103 (+) 1041 WP_015715838.1 CAP domain-containing protein -
  OOZ27_RS08725 (OOZ27_08725) ylbD 1616335..1616733 (+) 399 WP_003232233.1 YlbD family protein -
  OOZ27_RS08730 (OOZ27_08730) ylbE 1616749..1616988 (+) 240 WP_003232231.1 YlbE-like family protein -
  OOZ27_RS08735 (OOZ27_08735) ylbF 1617104..1617553 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  OOZ27_RS08740 (OOZ27_08740) ylbG 1617608..1617880 (+) 273 WP_015715839.1 YlbG family protein -
  OOZ27_RS08745 (OOZ27_08745) rsmD 1618202..1618756 (+) 555 WP_015715840.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  OOZ27_RS08750 (OOZ27_08750) coaD 1618761..1619246 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  OOZ27_RS08755 (OOZ27_08755) spoVV 1619257..1620483 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  OOZ27_RS08760 (OOZ27_08760) ylbK 1620664..1621446 (+) 783 WP_003232221.1 patatin family protein -
  OOZ27_RS08765 (OOZ27_08765) sepM 1621448..1622473 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=685106 OOZ27_RS08735 WP_003221370.1 1617104..1617553(+) (ylbF) [Bacillus subtilis strain MG-1]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=685106 OOZ27_RS08735 WP_003221370.1 1617104..1617553(+) (ylbF) [Bacillus subtilis strain MG-1]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1