Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EFK13_RS13940 Genome accession   NZ_CP096889
Coordinates   2713260..2715656 (-) Length   798 a.a.
NCBI ID   WP_129508076.1    Uniprot ID   -
Organism   Bacillus cabrialesii strain TE3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2708260..2720656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS13920 (EFK13_13920) - 2711186..2712247 (-) 1062 WP_129508078.1 AI-2E family transporter -
  EFK13_RS13925 (EFK13_13925) - 2712345..2712476 (-) 132 WP_003225895.1 YrzQ family protein -
  EFK13_RS13930 (EFK13_13930) - 2712498..2712689 (-) 192 WP_003225893.1 hypothetical protein -
  EFK13_RS13935 (EFK13_13935) - 2712701..2713225 (-) 525 WP_129508077.1 PRC-barrel domain-containing protein -
  EFK13_RS13940 (EFK13_13940) recD2 2713260..2715656 (-) 2397 WP_129508076.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EFK13_RS13945 (EFK13_13945) - 2715681..2716301 (-) 621 WP_202926392.1 tetratricopeptide repeat protein -
  EFK13_RS13950 (EFK13_13950) mnmA 2716387..2717502 (-) 1116 WP_129508074.1 tRNA 2-thiouridine(34) synthase MnmA -
  EFK13_RS13955 (EFK13_13955) - 2717530..2718672 (-) 1143 WP_129508073.1 cysteine desulfurase family protein -
  EFK13_RS13960 (EFK13_13960) cymR 2718691..2719107 (-) 417 WP_003225879.1 cysteine metabolism transcriptional regulator CymR -
  EFK13_RS13965 (EFK13_13965) - 2719309..2720574 (+) 1266 WP_064814373.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89122.71 Da        Isoelectric Point: 5.0262

>NTDB_id=684891 EFK13_RS13940 WP_129508076.1 2713260..2715656(-) (recD2) [Bacillus cabrialesii strain TE3]
MQQHPDQLNMEEEPYLKGTVNTVIYHNDTNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPKLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERIKAAILYTLETT
CLSEGHTYIETEKLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPVVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASQVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKPREIKFGDVVYRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVSFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLRNRLSVQIEEMDAELEALQKELPFSVHDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=684891 EFK13_RS13940 WP_129508076.1 2713260..2715656(-) (recD2) [Bacillus cabrialesii strain TE3]
GTGCAGCAGCATCCGGATCAGCTTAACATGGAGGAAGAGCCCTATTTAAAAGGGACAGTCAACACAGTCATCTATCATAA
TGACACCAATTTATATACGGTTCTGAAAGTGAAAGTCACAGAGACCTCCGAGGCCATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACTTACACGTTTTACGGCAAGATCGTAACCCATCCGAAGTTCGGGCTC
CAATTTCAAGCGGAGCATTTCAAAAAAGAGATACCGACGACTAAGGAAGGCATCATTCATTATTTATCGAGTGATTTATT
TGAGGGAATCGGCAAAAAAACAGCCGAAGAAATTGTCAAAAAGCTGGGCGACAGCGCGATTAATAAAATATTGGCTGACG
CTTCAGTGCTTTATGATGTTCCGAAGCTGTCAAAAAAGAAAGCAGATACGTTAGCCGGCGCCTTGCAGCGGCATCAGGGA
CTTGAGCAAATCATGATTTCCCTGAATCAGTTTGGCTTCGGCCCCCAGCTGTCTATGAAAATCTACCAAGCCTATGAATC
CGAAACGCTTGAAAAGATTCAGGAAAACCCTTATCAGCTCGTAAAAGATGTAGAAGGCATCGGGTTTGGGAAAGCGGATG
AGCTTGGGAGCAGAATGGGGCTTTCGGGCAATCATCCTGAGCGGATAAAAGCCGCCATTTTGTACACGCTTGAAACGACT
TGTCTGTCAGAAGGGCATACGTACATAGAAACGGAAAAGCTGATTATCGACACCCAATCACTGTTAAACCAGTCAGCAAG
GGAAGGGCAGCGCATCACGGAAATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ACGGCCGCTGTTATTTTCCATCGCTGTTTTACGCAGAACAAAACGTTGCAAAGCGTGTGAAACATATCGCAAGCCAAACC
GAATATGATGACCAGTTTCCTGAATCAGAATTTCTGCTCGCTTTAGGAGAACTGGAAGAACGGATGAATGTTCAGTATGC
CCCGAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCGCCGATGCTTCTTTTAACGGGAGGCCCGGGAACAGGGAAAA
CGACGGTAATCAGAGGAATTGTCGAACTATACGGAGAGCTTCACGGCGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCGTTTCCGGTTGTATTGGCCGCACCGACAGGAAGAGCGGCAAAACGGATGAGTGAATCAACGGGCCTTCCGGCAGT
CACGATTCACAGGCTGCTCGGCTGGAACGGCGCTGAGGGCTTTACCCATACAGAGGATCAGCCGATCGAAGGGAAGCTGT
TAATTATCGATGAAGCCAGTATGCTTGATATATGGCTGGCGAACCATTTGTTTAAAGCGATCCCTGATCATATTCAAATT
ATCATAGTCGGAGACGAAGATCAGCTGCCTTCTGTCGGCCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCACAGGTGAT
TCCGACTGTAAGATTGACAGACATCTACCGCCAGGCGGAGGGGTCATCAATCGTCGAGCTAGCCCACCAGATGAAAAATG
GCTTGCTGCCAAACAATTTGACTGCCCCGACGAAGGACCGTTCCTTTATTCGCTGCGGAGGCTCGCAAATTAAAGAGGTA
GTTGAGAAGGTTGTCGCCAACGCATTGAAAAAAGGCTATACGGCAAAGGACATTCAGGTTCTCGCCCCGATGTACAGAGG
CAAAGCCGGCATCAATGAACTGAATGTGATGCTGCAGGACATTTTAAATCCTCCTAAAGAAAAACCTAGGGAAATCAAGT
TCGGGGACGTTGTCTACAGAACCGGAGATAAAATTTTGCAGCTCGTCAATCAGCCGGAAAACAATGTGTTCAACGGAGAT
ATTGGCGAAATTACATCGATATTTTATGCAAAGGAAAATACCGAAAAAGAAGACATGGCCGTCGTATCTTTTGACGGCAA
TGAAATGACGTTTACGAAAAAAGATTTTAACCAGTTTACCCATGCGTATTGCTGCTCTATTCATAAGTCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTACTATAGAATGCTCAGAAGAAACCTCCTTTATACCGCGATTACG
AGAGCAAAGAAATTTCTCATTTTATGCGGAGAAGAGGAGGCGCTGGAGTGGGGCGTAAAAAATAATGACGCGACTGTCAG
ACAGACTTCCTTGAGAAACAGGCTTTCCGTACAGATTGAGGAAATGGATGCCGAGCTTGAGGCGTTGCAAAAAGAGCTCC
CGTTCAGCGTACACGACGCCAATATAGGAATGGAAGGCATAACGCCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-662)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

98.243

99.875

0.981