Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EFK13_RS08910 Genome accession   NZ_CP096889
Coordinates   1720534..1721313 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus cabrialesii strain TE3     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1715534..1726313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFK13_RS08890 (EFK13_08890) trmFO 1716227..1717534 (+) 1308 WP_129505717.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  EFK13_RS08895 (EFK13_08895) xerC 1717602..1718516 (+) 915 WP_064813767.1 tyrosine recombinase XerC -
  EFK13_RS08900 (EFK13_08900) clpQ 1718529..1719074 (+) 546 WP_064813768.1 ATP-dependent protease subunit ClpQ -
  EFK13_RS08905 (EFK13_08905) hslU 1719082..1720494 (+) 1413 WP_283107639.1 HslU--HslV peptidase ATPase subunit -
  EFK13_RS08910 (EFK13_08910) codY 1720534..1721313 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EFK13_RS08915 (EFK13_08915) flgB 1721696..1722085 (+) 390 WP_129505715.1 flagellar basal body rod protein FlgB -
  EFK13_RS08920 (EFK13_08920) flgC 1722085..1722537 (+) 453 WP_129505824.1 flagellar basal body rod protein FlgC -
  EFK13_RS08925 (EFK13_08925) fliE 1722549..1722869 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  EFK13_RS08930 (EFK13_08930) fliF 1722915..1724525 (+) 1611 WP_129505714.1 flagellar basal-body MS-ring/collar protein FliF -
  EFK13_RS08935 (EFK13_08935) fliG 1724538..1725554 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  EFK13_RS08940 (EFK13_08940) fliH 1725547..1726299 (+) 753 WP_129505713.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=684872 EFK13_RS08910 WP_003220850.1 1720534..1721313(+) (codY) [Bacillus cabrialesii strain TE3]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=684872 EFK13_RS08910 WP_003220850.1 1720534..1721313(+) (codY) [Bacillus cabrialesii strain TE3]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGTTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ATCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACCTCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTACCGATCATCGGAGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AATTTAATGACGATGACTTAATCCTTGCTGAATACGGCGCTACAGTTGTCGGAATGGAAATTCTGAGAGAAAAGGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGCCTACTTGTAGCAAGTAAAATCGCTGACCGCGTCGGCATTACCC
GTTCTGTTATTGTTAACGCACTCAGAAAGCTTGAAAGCGCGGGTGTCATTGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAACAAATTCCTAATTGAACTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467