Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   M1J35_RS18090 Genome accession   NZ_CP096886
Coordinates   3526434..3528797 (-) Length   787 a.a.
NCBI ID   WP_254651865.1    Uniprot ID   -
Organism   Rossellomorea sp. KS-H15a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3521434..3533797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1J35_RS18075 (M1J35_18075) dtd 3523030..3523473 (-) 444 WP_254651863.1 D-aminoacyl-tRNA deacylase -
  M1J35_RS18080 (M1J35_18080) - 3523487..3525676 (-) 2190 WP_254651864.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  M1J35_RS18085 (M1J35_18085) - 3525931..3526443 (-) 513 WP_060670793.1 adenine phosphoribosyltransferase -
  M1J35_RS18090 (M1J35_18090) recJ 3526434..3528797 (-) 2364 WP_254651865.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  M1J35_RS18095 (M1J35_18095) - 3528881..3529036 (+) 156 WP_254651866.1 hypothetical protein -
  M1J35_RS18100 (M1J35_18100) - 3529111..3529446 (-) 336 WP_034757294.1 lipopolysaccharide assembly LapA domain-containing protein -
  M1J35_RS18105 (M1J35_18105) - 3529462..3530388 (-) 927 WP_159362291.1 cation diffusion facilitator family transporter -
  M1J35_RS18110 (M1J35_18110) secDF 3530491..3532755 (-) 2265 WP_254651867.1 protein translocase subunit SecDF -
  M1J35_RS18115 (M1J35_18115) - 3532885..3533205 (-) 321 WP_034757287.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88578.83 Da        Isoelectric Point: 4.9153

>NTDB_id=684830 M1J35_RS18090 WP_254651865.1 3526434..3528797(-) (recJ) [Rossellomorea sp. KS-H15a]
MLNSKTRWILTETDEHKIAELANELKVPSLVAKLLINRDLDDVEEARNFLFDSGDSFHDPFLFEDMKKATERIHKAIQDG
ERILVYGDYDADGVSSTSVMMTVLRDLGAEVEFYIPNRFSEGYGPNEGAFRWAKDEEFSLIITVDTGISAVNEAKLAKDL
GMDLIITDHHEPGPELPETYALLHPKVGEAAYPFGELAGVGVAFKLAHALYGELPTHLLDLAAIGTIADLVPLRGENRLL
AKRGLAELRGSNRLGIKALCKIANAKQHEITEETVGFMIAPRINAVGRLGDADPAVDLMLTEDEEEAKALAEEIDGLNKE
RQAIVAQMTEEAVEMVERDFPLKDNHVLVIGKEGWNPGVVGIVASRLVDKFYRPTIVLSYDSEKGTAKGSARSIVGFDLF
KNLSTCRDILPHFGGHPMAAGMTLQLDDVSHLRSRLNELAGTELTSEDFIPVTQLDAPVTVDEITVESIEKLQLLAPFGM
KNPKPKWIIDHVSIEHYKKIGSAQNHLKLVLGDEGIQLDGVGFGLGELADHMTPFSNASVIGELSINEWNNRKKPQVFLH
DVKIDHWQLFDVRGIKQVHKWNGLIPEENKKLICFHPSTLDKLNLPKDEVILLEGSSTLDGLSTEKASLVLLDLPNSKPL
LEELLKKGRPHRIYAHFFQEEDHFFSTMPTRDHFKWYYGFLTKRGSFDIKKHGDDLAKYKGWSKETIDFMSQVFFDLKFV
TIDNGFISLNPAKTKKDLSESRTYQKKQQQYELENELLYSSYQELKTWFNERIEESVTIEEEVEAWT

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=684830 M1J35_RS18090 WP_254651865.1 3526434..3528797(-) (recJ) [Rossellomorea sp. KS-H15a]
ATGTTAAACTCAAAAACACGTTGGATATTGACAGAAACAGATGAACATAAAATAGCAGAATTGGCAAATGAACTAAAAGT
ACCTTCGCTTGTAGCGAAATTATTGATAAATCGTGATTTGGATGATGTAGAAGAAGCCCGGAATTTTTTATTTGATTCTG
GCGATTCATTTCACGATCCATTTTTATTTGAAGATATGAAAAAAGCAACGGAACGGATCCATAAGGCCATCCAAGACGGA
GAGAGAATCCTAGTCTACGGTGACTATGATGCTGACGGTGTCAGCTCAACGTCTGTTATGATGACGGTCCTGAGAGATCT
TGGCGCTGAAGTGGAATTTTATATCCCAAACCGTTTCAGCGAAGGATACGGTCCGAATGAAGGGGCGTTCCGCTGGGCGA
AGGATGAGGAGTTCTCACTCATCATCACGGTCGATACAGGGATCTCTGCCGTGAACGAAGCTAAACTCGCGAAAGATCTC
GGGATGGATCTGATCATTACAGACCATCATGAACCTGGACCCGAATTACCGGAAACCTACGCTCTACTCCATCCGAAAGT
GGGAGAAGCAGCCTACCCGTTCGGTGAACTTGCCGGGGTAGGAGTGGCATTTAAATTGGCCCATGCCTTGTACGGTGAAT
TGCCTACCCATCTACTGGATCTTGCTGCGATTGGAACCATTGCGGATCTCGTTCCCTTGAGAGGGGAGAACCGACTTCTG
GCTAAACGGGGTCTTGCAGAGCTCCGGGGTTCAAACCGACTGGGGATCAAAGCTTTATGCAAAATCGCCAATGCGAAGCA
GCATGAAATTACCGAAGAGACAGTCGGCTTCATGATCGCTCCACGGATCAATGCCGTCGGTCGTTTAGGTGATGCCGATC
CTGCCGTTGACCTCATGCTTACAGAAGACGAAGAAGAGGCCAAGGCACTGGCAGAGGAAATTGACGGCTTGAATAAAGAA
AGACAGGCGATCGTCGCCCAGATGACCGAGGAAGCCGTTGAGATGGTGGAGCGGGACTTCCCGCTTAAGGATAACCATGT
ACTCGTCATCGGAAAAGAAGGCTGGAATCCAGGAGTTGTCGGGATTGTGGCTTCCCGCCTTGTCGACAAATTTTACCGGC
CGACCATCGTGCTGAGCTACGACTCTGAAAAAGGGACGGCGAAAGGGTCTGCGAGAAGCATCGTTGGTTTTGATCTATTT
AAAAATCTATCAACCTGCCGGGATATCCTTCCCCACTTCGGAGGACATCCGATGGCTGCCGGAATGACGCTGCAATTAGA
CGATGTATCTCACTTGAGAAGCCGGTTGAATGAACTGGCCGGCACGGAACTGACATCCGAAGACTTCATCCCTGTCACAC
AACTCGATGCTCCTGTGACTGTGGACGAAATCACTGTTGAGTCGATTGAAAAGCTTCAGCTTTTGGCGCCTTTTGGAATG
AAAAATCCAAAGCCTAAGTGGATCATCGATCATGTGAGCATCGAGCACTATAAAAAAATCGGCTCTGCACAAAATCACCT
GAAGCTCGTTTTAGGGGACGAGGGTATTCAATTGGATGGTGTAGGCTTCGGGCTTGGTGAATTGGCTGACCACATGACAC
CTTTTTCCAATGCGTCCGTCATTGGTGAACTATCCATAAATGAGTGGAACAACCGCAAGAAGCCCCAGGTGTTTTTACAT
GATGTGAAAATCGATCATTGGCAATTATTCGATGTGCGGGGAATCAAGCAGGTCCATAAATGGAACGGACTCATCCCAGA
AGAAAATAAGAAGTTGATTTGTTTTCATCCATCCACGTTGGACAAACTGAACCTGCCGAAAGATGAAGTCATCCTCCTGG
AGGGAAGCTCGACTCTTGATGGGTTATCAACGGAGAAAGCGAGCCTTGTGCTCTTGGATCTGCCGAATTCCAAGCCTTTA
CTTGAAGAGCTTTTGAAGAAGGGGCGTCCTCACCGGATCTATGCTCATTTCTTCCAGGAAGAAGATCATTTCTTCAGTAC
GATGCCGACCCGGGACCACTTCAAATGGTACTACGGCTTTTTAACCAAACGTGGATCGTTCGATATCAAAAAGCATGGCG
ATGATCTCGCAAAATACAAAGGCTGGTCAAAAGAAACAATCGATTTCATGTCACAGGTGTTTTTTGATTTGAAGTTTGTT
ACAATAGACAATGGATTTATTTCTCTTAATCCTGCGAAAACCAAGAAAGATCTTTCTGAATCTCGAACATATCAGAAGAA
ACAACAACAATACGAGCTTGAAAACGAATTGTTATATTCTTCCTATCAAGAGTTGAAGACTTGGTTTAATGAAAGGATAG
AAGAGTCTGTTACAATTGAGGAGGAAGTAGAAGCATGGACTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-769)

RecJ OB domain (RecJ_OB)

(456-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.113

98.729

0.554