Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   M1J35_RS17985 Genome accession   NZ_CP096886
Coordinates   3503867..3506266 (-) Length   799 a.a.
NCBI ID   WP_254651857.1    Uniprot ID   -
Organism   Rossellomorea sp. KS-H15a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3498867..3511266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1J35_RS17960 (M1J35_17960) - 3500375..3501454 (-) 1080 WP_254651855.1 AI-2E family transporter -
  M1J35_RS17965 (M1J35_17965) - 3501586..3501717 (-) 132 WP_079531766.1 YrzQ family protein -
  M1J35_RS17970 (M1J35_17970) - 3501733..3501918 (-) 186 WP_034757353.1 hypothetical protein -
  M1J35_RS17975 (M1J35_17975) bioB 3502113..3503120 (-) 1008 WP_224519462.1 biotin synthase BioB -
  M1J35_RS17980 (M1J35_17980) - 3503136..3503732 (-) 597 WP_254651856.1 biotin transporter BioY -
  M1J35_RS17985 (M1J35_17985) recD2 3503867..3506266 (-) 2400 WP_254651857.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M1J35_RS17990 (M1J35_17990) - 3506284..3506955 (-) 672 WP_224519459.1 lipopolysaccharide assembly protein LapB -
  M1J35_RS17995 (M1J35_17995) mnmA 3507098..3508213 (-) 1116 WP_034757338.1 tRNA 2-thiouridine(34) synthase MnmA -
  M1J35_RS18000 (M1J35_18000) - 3508264..3509406 (-) 1143 WP_224519458.1 cysteine desulfurase family protein -
  M1J35_RS18005 (M1J35_18005) cymR 3509420..3509839 (-) 420 WP_034757332.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 799 a.a.        Molecular weight: 90452.14 Da        Isoelectric Point: 4.8574

>NTDB_id=684829 M1J35_RS17985 WP_254651857.1 3503867..3506266(-) (recD2) [Rossellomorea sp. KS-H15a]
MSQQDSLKLFGEEEIYIKGRHLVTIFHNEENLYSVVRIRVDETNDSYEDKEAVVTGNFPKIHEDDTYIFYGRFQEHPRFG
MQFHANHFKKEIPQTTQGVVHYLSSDLFKGIGKKTAEKIVEHIGENAISKILENPSLLDEIPKLPKEKAKSIYDTLSEHQ
GLERVMIMLNELGFGPQISMKVYQAYKEQALEIIQKNPYKLVEDIEGIGFTRADELGSKIGLTGSHPDRIKAGCLYTLEQ
TCVKQGHVYLEAEELIVTVKELLEKSQPERIEYTDISTQLVSLEEESKVIGEGTKVYVPSLYFSEKGIVTNIEKILSQTQ
YKDQFPQSEFLLSLGALEDRLGVQYAPSQKEAIETALMSPMLLLTGGPGTGKTTVIQGIVELFADLHGCSLDPKDYKDEP
FPVLLTAPTGRAAKRMTESTGLPAMTIHRLLGWNGQEGFQSDEERAIEGKLLIVDEVSMVDTWLAHQLLKALPDDIQVIF
VGDEDQLPSVGPGQVLKDLLNSESVPTVRLTDIYRQEEGSSIIELAHYMKRGQVPADLTKQQKDRSFFPCRTNQISEVVQ
KVVENAKKKGYSPKDIQVLAPMYRGPAGIDRLNELLQEIFNSNDGTRKEIAFGDVKYRIGDKVLQLVNQPENNVFNGDIG
EIVSIFYAKENTEKQDMIIVSYEGNEVTYTRQDLMQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRS
KQFLILCGELDAFKLGVEREDDFLRKTTLSEKLRGILHHEGRRVEEDLSEGDIPIEEVLLNEDPMIGMEGISPYDFMKA

Nucleotide


Download         Length: 2400 bp        

>NTDB_id=684829 M1J35_RS17985 WP_254651857.1 3503867..3506266(-) (recD2) [Rossellomorea sp. KS-H15a]
TTGAGCCAGCAAGACTCTTTAAAGCTGTTTGGTGAGGAAGAAATATATATAAAAGGAAGGCATCTTGTCACGATTTTTCA
TAATGAGGAGAACCTTTATTCGGTGGTCAGAATCCGTGTGGATGAAACGAATGATTCTTATGAGGATAAAGAAGCGGTCG
TAACCGGGAATTTCCCTAAGATACATGAAGATGATACCTATATATTTTATGGTAGATTTCAAGAGCATCCAAGATTCGGC
ATGCAGTTTCATGCCAATCATTTCAAGAAAGAAATACCCCAAACCACACAGGGTGTCGTCCATTATTTATCAAGTGATCT
CTTCAAAGGGATCGGGAAAAAAACAGCTGAAAAGATCGTTGAGCATATCGGGGAAAATGCGATCAGTAAAATACTCGAAA
ATCCAAGCCTTTTAGATGAAATTCCAAAGCTTCCAAAGGAAAAGGCTAAGAGTATCTATGATACGTTATCTGAGCATCAG
GGACTCGAGCGGGTCATGATCATGCTGAATGAGCTTGGATTCGGTCCTCAGATTTCCATGAAGGTCTATCAGGCTTACAA
AGAGCAGGCACTTGAAATCATTCAAAAGAATCCTTATAAGCTTGTGGAAGATATTGAAGGGATCGGCTTTACCCGGGCAG
ATGAATTGGGGTCCAAGATTGGTTTGACAGGCAGTCACCCGGACCGGATCAAAGCAGGCTGTTTATATACCCTGGAACAA
ACATGTGTCAAGCAGGGTCATGTGTATCTTGAAGCGGAAGAACTCATTGTTACGGTGAAAGAGCTCCTTGAGAAAAGTCA
GCCAGAAAGAATCGAATACACGGACATTTCCACTCAATTGGTTTCCTTGGAGGAAGAAAGCAAAGTCATCGGTGAAGGGA
CGAAGGTGTATGTTCCTTCCCTCTATTTCTCTGAAAAGGGGATTGTGACGAATATCGAAAAGATATTGTCCCAGACACAG
TATAAAGATCAATTCCCCCAGTCTGAATTCCTTCTGTCACTGGGTGCCCTGGAGGACAGGCTAGGGGTACAGTATGCGCC
TTCTCAAAAGGAAGCCATCGAGACGGCATTGATGTCTCCCATGCTCCTGTTGACGGGTGGACCGGGTACGGGGAAGACCA
CTGTCATTCAGGGGATCGTCGAACTGTTCGCCGATCTTCACGGGTGTTCTTTGGATCCCAAGGATTACAAAGATGAACCG
TTCCCGGTATTGCTCACGGCCCCTACAGGACGTGCAGCTAAGCGGATGACAGAATCTACGGGGCTGCCGGCCATGACGAT
CCACCGACTCCTCGGATGGAATGGTCAGGAAGGATTTCAGAGCGATGAAGAACGGGCCATCGAGGGCAAGCTGTTGATTG
TGGACGAAGTGTCCATGGTCGACACTTGGCTGGCCCATCAATTGCTGAAGGCTCTGCCTGATGATATTCAAGTGATATTT
GTCGGGGATGAAGATCAATTGCCGTCCGTCGGTCCGGGTCAGGTACTGAAGGACTTGTTGAATTCGGAAAGCGTGCCGAC
TGTCAGGTTGACGGATATATACAGGCAGGAAGAGGGTTCCTCGATCATTGAACTTGCTCACTATATGAAAAGGGGACAGG
TTCCCGCCGATTTGACCAAACAGCAAAAAGATCGTTCGTTCTTTCCCTGCAGGACGAATCAGATTTCAGAGGTCGTTCAG
AAAGTGGTGGAAAATGCCAAGAAGAAGGGCTACTCACCTAAAGATATACAGGTCCTTGCCCCAATGTACAGGGGCCCTGC
AGGGATCGACCGCTTGAATGAACTTCTTCAGGAAATCTTTAATAGTAACGATGGGACACGGAAAGAAATCGCCTTCGGGG
ACGTGAAATACCGGATCGGTGATAAAGTCCTTCAGCTTGTCAATCAGCCTGAAAACAATGTTTTCAACGGGGATATAGGT
GAAATCGTTTCGATCTTTTATGCGAAGGAAAACACCGAGAAACAGGACATGATCATCGTTTCGTATGAAGGCAATGAGGT
CACGTATACACGGCAGGACCTCATGCAAATCACCCATGCGTATTGCTGCTCGATCCATAAATCCCAGGGAAGCGAATTTC
CCATTGTCATTTTACCCGTCGTAAAGAGCTATTACCGGATGTTACGGAGAAATCTCCTATACACGGCCATTACAAGGAGC
AAGCAATTTCTCATTCTCTGCGGAGAGCTGGATGCTTTCAAGCTTGGAGTGGAGAGGGAAGATGATTTTCTCAGGAAAAC
GACCTTGAGTGAGAAGCTGAGAGGCATACTGCATCACGAGGGGCGTCGTGTGGAAGAAGATTTATCAGAAGGGGACATAC
CCATTGAAGAAGTCCTTCTGAATGAAGACCCGATGATTGGAATGGAAGGGATCAGCCCTTACGATTTCATGAAGGCATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-545)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-660)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.905

99.875

0.618