Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   M1I95_RS07350 Genome accession   NZ_CP096885
Coordinates   1506065..1508434 (+) Length   789 a.a.
NCBI ID   WP_318549611.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1501065..1513434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS07330 (M1I95_07330) cymR 1502162..1502581 (+) 420 WP_048006195.1 cysteine metabolism transcriptional regulator CymR -
  M1I95_RS07335 (M1I95_07335) - 1502593..1503735 (+) 1143 WP_318549609.1 cysteine desulfurase family protein -
  M1I95_RS07340 (M1I95_07340) mnmA 1503764..1504879 (+) 1116 WP_318549610.1 tRNA 2-thiouridine(34) synthase MnmA -
  M1I95_RS07345 (M1I95_07345) - 1505376..1506047 (+) 672 WP_053426482.1 tetratricopeptide repeat protein -
  M1I95_RS07350 (M1I95_07350) recD2 1506065..1508434 (+) 2370 WP_318549611.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M1I95_RS07355 (M1I95_07355) - 1508582..1508767 (+) 186 WP_048006190.1 hypothetical protein -
  M1I95_RS07360 (M1I95_07360) - 1508783..1508914 (+) 132 WP_079516445.1 YrzQ family protein -
  M1I95_RS07365 (M1I95_07365) - 1509007..1510092 (+) 1086 WP_318549613.1 AI-2E family transporter -
  M1I95_RS07370 (M1I95_07370) alaS 1510401..1513025 (+) 2625 WP_318549614.1 alanine--tRNA ligase -
  M1I95_RS07375 (M1I95_07375) - 1513109..1513375 (+) 267 WP_048006427.1 IreB family regulatory phosphoprotein -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 88928.30 Da        Isoelectric Point: 4.8487

>NTDB_id=684757 M1I95_RS07350 WP_318549611.1 1506065..1508434(+) (recD2) [Rossellomorea marisflavi strain B3]
MSQQDSLQLFGDEELYVKGRHLVTIFHNEDNMYSVVRIRVEETNDEGYSDKEAVVTGHFPKLHEEETYSFFGRFQDHPKF
GTQFHADHFKKEIPQSKQGIVHYLSSDLFSGIGTKTAEKIVEHVGENAITKILENPSVLDEVPKLPKEKAKTIFDTLSEH
QGLERVMIMLNDFGFGPQISMKIYQAYKEQALEIIHNNPYKLVEDIEGIGFTRADELGSKIGITGSHPDRIKAGCLYTLE
QTCVKQGHVYLEAEELIVSVKDLLEKSQSARIEFEEISAQVVALEEEGKVAGEGTKIYTPSLYFSEKGIVTNIERILAQT
DYEDQFPQSEFLLSLGALEDRLGVQYAPSQREAIETALMSPMLLLTGGPGTGKTTVINGIVELYADLHGCSLDPKEYKDE
PFPVLLAAPTGRAAKRMTESTGLPAMTIHRLLGWNGKEGFQTDEERAIEGKLLIVDEVSMVDTWLAHQLLKALPENIQVI
FVGDEDQLPSVGPGQVLKDLLESGRVPTVRLTDIYRQEEGSSIIDLAHQMKAGRLPHDLVKQQKDRSFFPCRTHQITEVV
QKVVENAKKKGFTPKDIQVLAPMYRGPAGIDRLNVLLQEIFNKNDGTRKEIAFGDVKYRIGDKVLQLVNQPENNVFNGDI
GEVVSIFYAKENTEKQDMVIVSYEGTEVTYTRQDLGQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRKNLLYTAITR
SKQFLILCGEEDAFRMGVEREEDIIRKTTLKERLQSMEDSVPEDDAPIDLMKVDPMIGMEGITPYDFMT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=684757 M1I95_RS07350 WP_318549611.1 1506065..1508434(+) (recD2) [Rossellomorea marisflavi strain B3]
TTGAGCCAGCAAGACTCTTTACAATTATTTGGAGATGAAGAACTGTACGTCAAAGGGCGCCATCTTGTCACGATCTTCCA
CAATGAAGACAATATGTACAGTGTCGTGCGCATCAGGGTGGAAGAGACCAATGATGAGGGCTACAGTGATAAAGAAGCCG
TTGTAACGGGACATTTCCCGAAGCTTCATGAAGAAGAAACCTACTCTTTTTTTGGTCGCTTTCAGGATCATCCGAAGTTC
GGCACCCAGTTTCATGCCGATCATTTCAAGAAGGAGATCCCCCAGTCCAAACAAGGGATCGTCCACTATTTATCGAGTGA
TCTGTTCAGTGGGATCGGGACGAAGACGGCTGAAAAGATCGTGGAACACGTAGGTGAAAATGCCATCACCAAAATCCTTG
AGAATCCATCGGTCCTCGACGAGGTGCCGAAGCTTCCGAAGGAAAAGGCAAAGACCATCTTTGATACATTATCCGAGCAT
CAGGGACTTGAGCGCGTCATGATCATGCTCAACGATTTCGGTTTCGGACCACAGATTTCCATGAAGATTTACCAGGCCTA
TAAAGAACAGGCACTGGAGATCATCCACAACAATCCCTATAAGCTGGTGGAGGATATCGAAGGCATCGGTTTCACCCGTG
CAGATGAACTAGGCTCGAAGATCGGGATCACAGGCAGTCATCCCGACAGGATCAAGGCAGGCTGTTTGTATACGTTGGAG
CAGACGTGCGTGAAACAGGGTCATGTGTACCTTGAGGCTGAAGAACTCATTGTGAGCGTCAAGGACCTGCTGGAAAAGAG
TCAGTCCGCACGCATCGAATTCGAGGAGATCTCTGCCCAGGTCGTGGCGCTGGAAGAGGAAGGGAAAGTCGCCGGTGAGG
GGACGAAGATTTACACCCCTTCCCTTTATTTCTCCGAAAAAGGTATTGTCACGAATATCGAGAGGATCCTTGCCCAGACC
GATTACGAGGATCAGTTCCCCCAATCGGAATTCCTCCTTTCCTTAGGGGCGTTGGAGGACCGCCTGGGCGTGCAGTATGC
CCCCTCGCAGCGTGAAGCCATCGAAACGGCACTCATGAGCCCGATGCTCCTCTTGACGGGAGGTCCTGGTACGGGGAAGA
CCACCGTCATCAATGGGATTGTCGAGCTGTATGCCGACCTTCATGGCTGTTCACTCGATCCGAAGGAATACAAAGATGAG
CCGTTCCCGGTGCTTCTTGCTGCCCCGACGGGAAGGGCCGCCAAGCGGATGACGGAGTCGACGGGACTGCCTGCCATGAC
CATCCACCGCTTGTTGGGCTGGAATGGAAAAGAAGGTTTTCAGACAGACGAAGAAAGGGCCATCGAAGGAAAGCTGCTGA
TTGTCGATGAAGTATCGATGGTGGATACATGGCTTGCCCATCAGCTCCTCAAGGCCCTGCCTGAAAATATTCAGGTGATT
TTCGTGGGTGATGAAGATCAACTTCCATCCGTCGGACCGGGACAGGTGCTGAAGGATCTATTGGAATCGGGACGGGTGCC
GACGGTGCGATTGACGGATATCTACCGCCAGGAAGAAGGCTCTTCCATCATCGACCTTGCCCATCAAATGAAGGCGGGAC
GTTTGCCGCATGACCTTGTGAAGCAGCAGAAGGACCGTTCTTTCTTCCCTTGCCGGACCCATCAGATCACCGAAGTGGTT
CAGAAAGTGGTGGAAAACGCAAAGAAGAAAGGCTTCACACCGAAGGATATTCAGGTTCTGGCCCCGATGTACAGAGGGCC
AGCAGGTATCGACCGGTTGAACGTCCTTCTCCAGGAAATCTTCAATAAGAATGATGGAACGAGGAAGGAAATTGCCTTCG
GGGATGTGAAGTACCGGATCGGGGACAAAGTACTTCAGCTTGTCAATCAGCCCGAGAACAATGTCTTCAACGGGGACATC
GGTGAAGTGGTTTCCATCTTCTACGCAAAGGAAAACACGGAAAAGCAGGACATGGTCATTGTTTCTTACGAGGGGACGGA
GGTCACCTATACCCGTCAGGATCTCGGACAGATCACCCATGCTTACTGTTGCTCTATCCATAAATCCCAGGGAAGTGAGT
TTCCCATCGTCATCCTTCCGGTGGTGAAAAGCTATTACCGTATGCTGAGGAAAAATCTTTTATATACGGCCATCACCAGG
AGCAAACAGTTCCTCATCCTGTGCGGGGAAGAAGATGCGTTCCGTATGGGGGTCGAACGGGAAGAAGATATCATAAGGAA
GACGACCCTGAAGGAAAGACTTCAATCCATGGAAGACAGTGTGCCGGAAGATGATGCACCGATCGACTTGATGAAGGTGG
ATCCCATGATCGGGATGGAGGGCATCACACCGTATGACTTCATGACGTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-661)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

AAA domain (AAA_30)

(346-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.312

100

0.629