Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   M1I95_RS07240 Genome accession   NZ_CP096885
Coordinates   1481334..1483694 (+) Length   786 a.a.
NCBI ID   WP_317947691.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain B3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1476334..1488694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1I95_RS07225 (M1I95_07225) - 1477637..1477957 (+) 321 WP_053426463.1 post-transcriptional regulator -
  M1I95_RS07230 (M1I95_07230) secDF 1478129..1480390 (+) 2262 WP_318549602.1 protein translocase subunit SecDF -
  M1I95_RS07235 (M1I95_07235) - 1480879..1481223 (+) 345 WP_317947690.1 lipopolysaccharide assembly LapA domain-containing protein -
  M1I95_RS07240 (M1I95_07240) recJ 1481334..1483694 (+) 2361 WP_317947691.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  M1I95_RS07245 (M1I95_07245) - 1483685..1484197 (+) 513 WP_048006207.1 adenine phosphoribosyltransferase -
  M1I95_RS07250 (M1I95_07250) - 1484507..1486699 (+) 2193 WP_159640538.1 RelA/SpoT family protein -
  M1I95_RS07255 (M1I95_07255) dtd 1486714..1487151 (+) 438 WP_318549603.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88311.86 Da        Isoelectric Point: 4.8687

>NTDB_id=684756 M1I95_RS07240 WP_317947691.1 1481334..1483694(+) (recJ) [Rossellomorea marisflavi strain B3]
MLNAKTRWKMKDSDQHKIAELAEELNVPPLVAKLLINRDLADADDARNFLFDTGGSFHDPFLFDDMQKAKDRIMLAIEQE
ERILVYGDYDADGVSSTSVLMTALTDLGAQAEFYIPNRFTEGYGPNEEAFRWAADEGFAVIITVDTGISAVGEAKLAEEL
GIDLILTDHHEPGPELPPVFAMIHPKVEGCSYPFKELAGVGVALKLAHALYGEFPDHLLDLAAIGTIADLVPLHGENRLI
AKKGIARLKVTDRLGIKALCRVANAQQNEMNEETVGFMIAPRINAVGRLGDADPAVDLMLSRDPEEAKALAEEIDGLNKE
RQSIVAKMTEEAVEMVEKEFPPSENGVLVIGKEGWNPGVVGIVASRLVDRFYRPTIVLSFDPDSNKAKGSARSIAGFDLF
KNLSMNRELLPHFGGHPMAAGMTLALSDVDELRSRLNEQAKEVLSKDDFIPVTELDAEVAVDEITVESIEKMHLLAPFGM
NNPKPKWVIRDVSIDHYKKIGSAQNHLKLVLAENGVQVDGVGFGLGELADHMTPYVKASVIGELSINEWNNRKKPQIFLQ
DIQISSWQLFDMRGIKQVTKWAPLIPDGDRVIVCFHPKTADTTLFKGEVRYIQSESDLEGIVVDGCNLVLLDLPGDRRLM
EQLLELGRPHRIYAHFHQHEDHFFSTMPTRDHFKWYYAFLHKRGSFDLKKHGNDLAKYKGWSMETIDFMSQVFFELKFVT
IEDGLISLHPVKVKKDLSESPAYMRKQHQYELENELLYSSYQELKTWFSERMKESAIVEEEVEAWT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=684756 M1I95_RS07240 WP_317947691.1 1481334..1483694(+) (recJ) [Rossellomorea marisflavi strain B3]
ATGTTAAATGCAAAAACACGCTGGAAAATGAAGGATTCTGACCAGCACAAGATAGCAGAATTGGCAGAAGAGTTGAATGT
TCCCCCGCTTGTTGCGAAATTATTGATAAATCGGGATTTGGCAGATGCCGACGATGCCCGGAACTTTTTATTTGATACAG
GCGGATCGTTTCATGATCCATTTCTTTTTGATGATATGCAAAAAGCGAAAGACCGCATCATGCTGGCAATCGAGCAAGAG
GAGCGCATCCTTGTGTATGGTGACTATGATGCCGACGGGGTAAGTTCTACATCCGTCCTGATGACGGCACTCACAGATCT
CGGAGCACAGGCGGAATTTTATATCCCTAACCGGTTCACCGAAGGATACGGACCGAATGAAGAAGCCTTCAGATGGGCTG
CTGATGAAGGGTTCGCCGTTATCATCACGGTGGATACCGGTATATCCGCAGTGGGAGAGGCCAAGCTTGCCGAAGAACTT
GGTATCGACTTGATCTTGACGGATCACCATGAACCGGGTCCGGAATTGCCGCCGGTCTTCGCCATGATCCATCCGAAAGT
GGAAGGGTGTTCCTATCCATTCAAGGAACTGGCAGGGGTCGGTGTGGCTTTGAAGCTCGCCCACGCTCTCTACGGAGAGT
TTCCAGACCATCTGCTGGATTTGGCCGCAATCGGTACGATCGCCGATCTGGTTCCCCTCCACGGGGAAAACCGGCTGATC
GCCAAGAAGGGGATCGCCAGGCTGAAGGTAACGGACCGCCTTGGGATCAAGGCCCTTTGCCGTGTGGCGAATGCCCAGCA
AAATGAAATGAATGAAGAGACCGTTGGCTTCATGATAGCACCGCGTATCAATGCCGTGGGTAGGCTTGGCGATGCCGATC
CCGCAGTGGATCTCATGCTCTCCCGCGACCCTGAAGAAGCGAAGGCACTCGCAGAAGAGATTGACGGCTTGAACAAAGAG
CGCCAATCCATCGTAGCGAAAATGACGGAAGAAGCTGTAGAGATGGTGGAGAAGGAATTCCCTCCATCTGAAAACGGTGT
CCTTGTCATCGGGAAGGAAGGCTGGAACCCTGGGGTAGTGGGAATTGTTGCCTCCCGTCTCGTCGACAGGTTTTACCGTC
CGACCATTGTCCTTAGTTTCGATCCTGATTCGAATAAAGCGAAAGGTTCTGCAAGAAGCATTGCCGGGTTCGATCTGTTC
AAGAATCTCTCCATGAATCGTGAACTCCTTCCCCATTTCGGGGGGCATCCGATGGCTGCGGGAATGACCCTTGCCCTATC
CGATGTCGATGAGCTCCGTTCAAGATTGAATGAACAGGCAAAAGAAGTCCTGAGCAAAGACGATTTCATCCCGGTTACAG
AGCTCGATGCCGAAGTCGCCGTGGACGAGATCACCGTTGAATCCATCGAGAAAATGCACCTCCTTGCGCCATTCGGGATG
AACAACCCGAAGCCGAAGTGGGTCATACGGGATGTATCGATCGATCATTATAAAAAGATTGGTTCTGCTCAGAATCACCT
TAAGCTTGTCCTGGCCGAAAACGGTGTACAAGTGGATGGGGTTGGGTTCGGCCTCGGTGAACTTGCCGATCACATGACGC
CTTATGTAAAAGCTTCCGTTATCGGAGAACTGTCGATCAATGAATGGAATAATCGCAAGAAGCCTCAGATCTTCCTGCAG
GATATCCAGATTTCGTCCTGGCAGCTTTTCGATATGAGGGGGATCAAGCAGGTGACGAAATGGGCCCCTCTCATCCCTGA
TGGTGACAGGGTGATCGTATGCTTCCATCCGAAGACGGCGGATACAACGCTGTTCAAAGGGGAAGTCCGGTATATCCAGA
GTGAATCCGATCTTGAAGGGATCGTGGTGGATGGATGCAATCTCGTACTCCTCGATCTCCCTGGGGACCGTCGACTGATG
GAGCAGCTTCTCGAGCTCGGCAGGCCGCATCGCATCTACGCCCATTTCCACCAGCATGAAGATCATTTCTTCAGTACGAT
GCCCACCCGTGATCATTTCAAATGGTATTATGCCTTCCTCCATAAGAGGGGTTCATTCGATCTGAAAAAACACGGGAATG
ACCTTGCCAAGTACAAGGGATGGTCCATGGAAACAATCGATTTCATGTCACAGGTGTTTTTTGAATTGAAGTTTGTTACA
ATAGAAGATGGTTTGATTTCTCTTCATCCTGTCAAAGTGAAGAAAGACCTGTCCGAATCTCCTGCCTACATGAGGAAGCA
GCATCAGTACGAGCTTGAAAATGAGCTCCTGTATTCGTCATATCAGGAACTGAAGACATGGTTCAGCGAAAGGATGAAAG
AGTCCGCTATAGTTGAGGAGGAAGTAGAAGCATGGACTTGA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-768)

DHHA1 domain (DHHA1)

(305-439)

RecJ OB domain (RecJ_OB)

(456-561)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

55.826

99.364

0.555