Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   LFL98_RS06110 Genome accession   NZ_CP110365
Coordinates   1181682..1182599 (+) Length   305 a.a.
NCBI ID   WP_015252359.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176682..1187599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS06095 (LFL98_06100) trpS 1177262..1178254 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  LFL98_RS06100 (LFL98_06105) oppA 1178998..1180635 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  LFL98_RS06105 (LFL98_06110) oppB 1180743..1181678 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  LFL98_RS06110 (LFL98_06115) amiD 1181682..1182599 (+) 918 WP_015252359.1 oligopeptide ABC transporter permease OppC Regulator
  LFL98_RS06115 (LFL98_06120) oppD 1182604..1183680 (+) 1077 WP_014906294.1 oligopeptide ABC transporter ATP-binding protein OppD -
  LFL98_RS06120 (LFL98_06125) oppF 1183682..1184599 (+) 918 WP_003239287.1 oligopeptide ABC transporter ATP-binding protein OppF -
  LFL98_RS06125 (LFL98_06130) yjbB 1184706..1185863 (+) 1158 WP_277737212.1 MFS transporter -
  LFL98_RS06130 (LFL98_06135) yjbC 1186027..1186605 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  LFL98_RS06135 (LFL98_06140) spx 1186786..1187181 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33635.15 Da        Isoelectric Point: 10.2873

>NTDB_id=684682 LFL98_RS06110 WP_015252359.1 1181682..1182599(+) (amiD) [Bacillus subtilis strain HY2-62]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAILDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=684682 LFL98_RS06110 WP_015252359.1 1181682..1182599(+) (amiD) [Bacillus subtilis strain HY2-62]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGAGACATTTTCGTCCGTACATGGGTAGGGGCTCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTATTCTCGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCGATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGTTTCAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364