Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA48_RS25250 Genome accession   NZ_CP110353
Coordinates   5376872..5377297 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PALA48     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5371872..5382297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA48_RS25235 (PALA48_05007) pilX 5372436..5373023 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA48_RS25240 (PALA48_05008) pilY1 5373035..5376526 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PALA48_RS25245 (PALA48_05009) pilY2 5376528..5376875 (+) 348 WP_012614546.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA48_RS25250 (PALA48_05010) comF 5376872..5377297 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PALA48_RS25255 (PALA48_05011) ispH 5377344..5378288 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA48_RS25260 (PALA48_05012) fkpB 5378374..5378814 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA48_RS25265 (PALA48_05013) lspA 5378807..5379316 (-) 510 WP_003102615.1 signal peptidase II -
  PALA48_RS25270 (PALA48_05014) ileS 5379309..5382140 (-) 2832 WP_004352756.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=684608 PALA48_RS25250 WP_003094721.1 5376872..5377297(+) (comF) [Pseudomonas aeruginosa strain PALA48]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=684608 PALA48_RS25250 WP_003094721.1 5376872..5377297(+) (comF) [Pseudomonas aeruginosa strain PALA48]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383