Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   M1764_RS00510 Genome accession   NZ_CP096771
Coordinates   156168..158006 (+) Length   612 a.a.
NCBI ID   WP_248703092.1    Uniprot ID   -
Organism   Bifidobacterium longum strain W13     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 152448..167670 156168..158006 within 0


Gene organization within MGE regions


Location: 152448..167670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1764_RS00495 (M1764_00495) - 152448..153011 (-) 564 WP_007055052.1 BRO family protein -
  M1764_RS00500 (M1764_00500) - 153373..153894 (+) 522 WP_032684783.1 MarR family transcriptional regulator -
  M1764_RS00505 (M1764_00505) rcrP 154081..155952 (+) 1872 WP_248703091.1 ABC transporter ATP-binding protein Regulator
  M1764_RS00510 (M1764_00510) rcrQ 156168..158006 (+) 1839 WP_248703092.1 ABC transporter ATP-binding protein Regulator
  M1764_RS00515 (M1764_00515) - 158159..159205 (-) 1047 WP_015512103.1 FAD:protein FMN transferase -
  M1764_RS00520 (M1764_00520) - 159288..160706 (+) 1419 WP_050759026.1 MFS transporter -
  M1764_RS00530 (M1764_00530) rsmI 161286..162296 (+) 1011 WP_041473892.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M1764_RS09885 - 162323..162700 (-) 378 WP_065437175.1 hypothetical protein -
  M1764_RS00540 (M1764_00540) - 162691..163338 (-) 648 WP_007052934.1 hypothetical protein -
  M1764_RS00545 (M1764_00545) metG 163655..165520 (+) 1866 WP_248703093.1 methionine--tRNA ligase -
  M1764_RS00550 (M1764_00550) - 166558..167634 (-) 1077 WP_032682910.1 hypothetical protein -

Sequence

Protein


Download         Length: 612 a.a.        Molecular weight: 67107.54 Da        Isoelectric Point: 6.2415

>NTDB_id=684145 M1764_RS00510 WP_248703092.1 156168..158006(+) (rcrQ) [Bifidobacterium longum strain W13]
MPRGPMGGRRAVEEPHDFGKVMGKLVNYCRNYLPVIIIALILGAAGTVCQIVGPDKLKDMTNEIVKGLPAIVNGRPVMNS
VDFGTVGHIAWTLVALYVGYAVLGYVQSWMMANVTQRTAQRLRESISVKINKLPLKYFDKVSYGDVLSRITNDVDAIGQT
LGQSLGSLITSVTLFVGALVMMFYNNVIMTLCAIGASLIGLIIMMAIMKSSQKYFARQQMALGDVNGHVEEMYAGHLIVK
AYNGEADSIRRFEKYNSDLYESGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALALDGQIEFGVIVAFMMYVRLFTQPL
SQFAQAFQNLQRCAAAAERVFGFLEEPEMEDESGKQALLGKNYMGGHEVKGDVEFSHVQFGYEPGKPIIHDFSASVKAGQ
KVAIVGPTGAGKTTMVNLLMRFYEISGGSISIDGVDTKSVPRWNVHDQFSMVLQDTWVFRGTVRENVAYSKPGVTNKQIE
DACKAVGLDHFIRSLPDGYDTVLDDKSSLSQGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVGRTS
FVIAHRLSTIRDADMILVMNHGDVIERGTHDELLAAGGFYADLYNSQFALAD

Nucleotide


Download         Length: 1839 bp        

>NTDB_id=684145 M1764_RS00510 WP_248703092.1 156168..158006(+) (rcrQ) [Bifidobacterium longum strain W13]
ATGCCAAGAGGACCAATGGGCGGCAGGCGTGCCGTCGAAGAGCCCCATGATTTCGGCAAAGTCATGGGCAAACTCGTGAA
CTACTGCCGCAACTATCTTCCCGTCATCATCATCGCGCTCATCCTGGGCGCGGCCGGCACCGTCTGCCAGATCGTCGGCC
CGGACAAGCTCAAGGACATGACCAACGAGATCGTCAAAGGTCTGCCCGCCATCGTTAACGGCAGACCGGTGATGAACTCG
GTAGATTTCGGCACGGTGGGCCACATCGCCTGGACTTTGGTGGCCCTGTACGTGGGCTACGCCGTGCTCGGCTACGTGCA
AAGCTGGATGATGGCCAACGTCACCCAGCGCACCGCCCAGCGACTGCGCGAGTCCATCTCGGTCAAAATCAACAAACTGC
CGCTCAAATACTTCGACAAGGTTAGCTACGGCGACGTGCTGTCGCGCATAACCAACGATGTGGACGCCATCGGCCAGACG
CTGGGCCAGTCGCTCGGCTCGCTGATTACCTCGGTGACGCTGTTCGTGGGCGCGCTGGTGATGATGTTCTACAACAACGT
GATCATGACCCTGTGCGCCATCGGTGCCAGCCTCATCGGCCTGATCATCATGATGGCCATCATGAAGTCCTCCCAGAAGT
ACTTCGCCCGGCAGCAGATGGCGCTGGGTGACGTCAACGGCCACGTGGAGGAGATGTACGCCGGTCACCTCATCGTCAAG
GCATACAACGGCGAGGCCGATTCGATTCGTCGCTTCGAGAAGTACAACTCGGACCTCTACGAGTCCGGCTGGAAGTCGCA
GTTCCTCTCCGGCCTGATGATGCCGCTCATGAATTTCGTGGGCAACTTCGGCTACGTGGTGGTGTGCGTGGTGGGCGCGG
CGCTCGCGCTCGACGGGCAGATCGAGTTCGGCGTGATCGTGGCGTTCATGATGTATGTCCGCCTGTTCACTCAGCCGCTT
TCGCAGTTTGCGCAGGCCTTCCAGAACCTGCAGCGCTGCGCGGCCGCCGCCGAGCGCGTGTTCGGCTTCCTTGAAGAGCC
GGAGATGGAAGACGAATCCGGCAAGCAGGCCCTACTCGGCAAGAACTACATGGGCGGCCACGAAGTGAAGGGCGACGTGG
AATTCAGCCACGTGCAGTTCGGCTACGAACCGGGCAAGCCGATCATCCACGACTTCTCCGCCTCCGTCAAGGCCGGGCAG
AAGGTCGCCATCGTCGGCCCGACCGGTGCCGGCAAGACCACCATGGTCAACCTGCTGATGCGCTTCTATGAGATTTCCGG
CGGTTCGATTTCGATTGACGGCGTGGACACCAAGTCCGTGCCGCGCTGGAACGTGCACGACCAGTTCTCCATGGTGTTGC
AGGATACGTGGGTGTTCCGCGGCACTGTGCGCGAGAACGTCGCTTACTCCAAGCCTGGCGTGACCAACAAGCAAATCGAG
GATGCGTGCAAGGCCGTGGGCCTCGACCACTTCATCCGCTCACTGCCGGACGGCTATGACACCGTGCTCGATGACAAGTC
GTCGCTCTCCCAGGGCCAGAAGCAGCTGCTGACCATCGCCCGCGCGATGGTGCAGGACGCGCCGATTCTGATTCTCGACG
AGGCCACCTCCTCGGTCGATACCCGTACTGAAGAGCTGATTCAGAAGGCCATGGATGCGCTGACCGTGGGGCGTACGAGC
TTTGTGATCGCGCATCGCCTCTCCACGATTCGCGACGCCGACATGATCCTCGTCATGAACCACGGCGACGTGATCGAGCG
CGGCACGCATGATGAACTGCTGGCGGCGGGCGGTTTTTACGCCGACCTCTACAACAGCCAGTTCGCGCTTGCTGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(390-537)

ABC transporter transmembrane region (ABC_membrane)

(37-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.252

96.078

0.521