Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA40_RS02960 Genome accession   NZ_CP110349
Coordinates   654869..655594 (-) Length   241 a.a.
NCBI ID   WP_016852388.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA40     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 649869..660594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA40_RS02935 (PALA40_00581) - 650341..650856 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PALA40_RS02940 (PALA40_00582) rarD 651546..652442 (-) 897 WP_003103301.1 EamA family transporter RarD -
  PALA40_RS02945 (PALA40_00583) - 652645..653619 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  PALA40_RS02950 (PALA40_00584) - 653681..654439 (-) 759 WP_016852387.1 TOBE domain-containing protein -
  PALA40_RS02955 (PALA40_00585) - 654507..654827 (-) 321 WP_016263902.1 YfiM family lipoprotein -
  PALA40_RS02960 (PALA40_00586) comF 654869..655594 (-) 726 WP_016852388.1 ComF family protein Machinery gene
  PALA40_RS02965 (PALA40_00587) - 655733..656026 (-) 294 WP_003084806.1 hypothetical protein -
  PALA40_RS02970 (PALA40_00588) - 656080..657006 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  PALA40_RS02975 (PALA40_00589) - 657124..657882 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  PALA40_RS02980 (PALA40_00590) - 657959..658207 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PALA40_RS02985 (PALA40_00591) - 658218..659594 (+) 1377 WP_016852389.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA40_RS02990 (PALA40_00592) - 659596..660474 (+) 879 WP_016852390.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27157.71 Da        Isoelectric Point: 11.3728

>NTDB_id=684138 PALA40_RS02960 WP_016852388.1 654869..655594(-) (comF) [Pseudomonas aeruginosa strain PALA40]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HRLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=684138 PALA40_RS02960 WP_016852388.1 654869..655594(-) (comF) [Pseudomonas aeruginosa strain PALA40]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACCGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGGCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382