Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA36_RS02600 Genome accession   NZ_CP110348
Coordinates   562696..563421 (-) Length   241 a.a.
NCBI ID   WP_003129066.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA36     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 557696..568421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA36_RS02575 (PALA36_00511) - 558168..558683 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PALA36_RS02580 (PALA36_00512) rarD 559373..560269 (-) 897 WP_003103301.1 EamA family transporter RarD -
  PALA36_RS02585 (PALA36_00513) - 560472..561446 (-) 975 WP_003129062.1 serine/threonine protein kinase -
  PALA36_RS02590 (PALA36_00514) - 561508..562266 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  PALA36_RS02595 (PALA36_00515) - 562334..562654 (-) 321 WP_031639707.1 YfiM family lipoprotein -
  PALA36_RS02600 (PALA36_00516) comF 562696..563421 (-) 726 WP_003129066.1 ComF family protein Machinery gene
  PALA36_RS02605 (PALA36_00517) - 563560..563853 (-) 294 WP_003084806.1 hypothetical protein -
  PALA36_RS02610 (PALA36_00518) - 563907..564833 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  PALA36_RS02615 (PALA36_00519) - 564951..565709 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  PALA36_RS02620 (PALA36_00520) - 565786..566034 (+) 249 WP_003111233.1 acetyl-CoA carboxylase -
  PALA36_RS02625 (PALA36_00521) - 566045..567421 (+) 1377 WP_033957759.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA36_RS02630 (PALA36_00522) - 567423..568301 (+) 879 WP_021263093.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27035.55 Da        Isoelectric Point: 10.8040

>NTDB_id=684040 PALA36_RS02600 WP_003129066.1 562696..563421(-) (comF) [Pseudomonas aeruginosa strain PALA36]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=684040 PALA36_RS02600 WP_003129066.1 562696..563421(-) (comF) [Pseudomonas aeruginosa strain PALA36]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCTTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382