Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA52_RS23420 Genome accession   NZ_CP110347
Coordinates   5075786..5076211 (+) Length   141 a.a.
NCBI ID   WP_024914644.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5070786..5081211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA52_RS23405 (PALA52_04647) pilX 5071356..5071943 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA52_RS23410 (PALA52_04648) pilY1 5071955..5075440 (+) 3486 WP_024914646.1 type 4a pilus biogenesis protein PilY1 -
  PALA52_RS23415 (PALA52_04649) pilY2 5075442..5075789 (+) 348 WP_024914645.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA52_RS23420 (PALA52_04650) comF 5075786..5076211 (+) 426 WP_024914644.1 type 4a pilus minor pilin PilE Machinery gene
  PALA52_RS23425 (PALA52_04651) ispH 5076256..5077200 (-) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA52_RS23430 (PALA52_04652) fkpB 5077286..5077726 (-) 441 WP_024914643.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA52_RS23435 (PALA52_04653) lspA 5077719..5078228 (-) 510 WP_024914642.1 signal peptidase II -
  PALA52_RS23440 (PALA52_04654) ileS 5078221..5081052 (-) 2832 WP_024914641.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15338.37 Da        Isoelectric Point: 9.8393

>NTDB_id=684002 PALA52_RS23420 WP_024914644.1 5075786..5076211(+) (comF) [Pseudomonas aeruginosa strain PALA52]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDVAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYSLTIETPTSTTYTLTATPINSQTRDKSCGKLTLNQLGERGAAGKTGNNTTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=684002 PALA52_RS23420 WP_024914644.1 5075786..5076211(+) (comF) [Pseudomonas aeruginosa strain PALA52]
ATGAGGACAAGACAGAAGGGCTTCACATTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATCCCGAGCTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGTGGCCGCGCGCC
AGGAGCGCTATTACTCGCAGAATCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTCTACAGCCTCACCATAGAGACCCCGACCAGCACCACCTACACTCTGACCGCGACCCCGATCAATTCGCA
GACGCGCGACAAGTCCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
CCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

39.31

100

0.404