Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA35_RS02475 Genome accession   NZ_CP110346
Coordinates   540402..541127 (-) Length   241 a.a.
NCBI ID   WP_023088772.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA35     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 535402..546127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA35_RS02450 (PALA35_00492) - 535875..536390 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PALA35_RS02455 (PALA35_00493) rarD 537079..537975 (-) 897 WP_003103301.1 EamA family transporter RarD -
  PALA35_RS02460 (PALA35_00494) - 538178..539152 (-) 975 WP_023107657.1 serine/threonine protein kinase -
  PALA35_RS02465 (PALA35_00495) - 539214..539972 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  PALA35_RS02470 (PALA35_00496) - 540040..540360 (-) 321 WP_003129064.1 YfiM family lipoprotein -
  PALA35_RS02475 (PALA35_00497) comF 540402..541127 (-) 726 WP_023088772.1 ComF family protein Machinery gene
  PALA35_RS02480 (PALA35_00498) - 541266..541559 (-) 294 WP_003084806.1 hypothetical protein -
  PALA35_RS02485 (PALA35_00499) - 541613..542539 (-) 927 WP_269974683.1 LysR family transcriptional regulator -
  PALA35_RS02490 (PALA35_00500) - 542657..543415 (+) 759 WP_003111232.1 5-oxoprolinase subunit PxpA -
  PALA35_RS02495 (PALA35_00501) - 543492..543740 (+) 249 WP_134301251.1 acetyl-CoA carboxylase -
  PALA35_RS02500 (PALA35_00502) - 543751..545127 (+) 1377 WP_269974684.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA35_RS02505 (PALA35_00503) - 545129..546007 (+) 879 WP_269974685.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27045.58 Da        Isoelectric Point: 10.5596

>NTDB_id=683838 PALA35_RS02475 WP_023088772.1 540402..541127(-) (comF) [Pseudomonas aeruginosa strain PALA35]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLIIRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPHPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPTSDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=683838 PALA35_RS02475 WP_023088772.1 540402..541127(-) (comF) [Pseudomonas aeruginosa strain PALA35]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCATCCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCACCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCCGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCACCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382