Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA30_RS26610 Genome accession   NZ_CP110345
Coordinates   5645630..5646055 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PALA30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5640630..5651055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA30_RS26595 (PALA30_05236) pilX 5641194..5641781 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PALA30_RS26600 (PALA30_05237) pilY1 5641793..5645284 (+) 3492 WP_061194891.1 type 4a pilus biogenesis protein PilY1 -
  PALA30_RS26605 (PALA30_05238) pilY2 5645286..5645633 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA30_RS26610 (PALA30_05239) comF 5645630..5646055 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PALA30_RS26615 (PALA30_05240) ispH 5646102..5647046 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA30_RS26620 (PALA30_05241) fkpB 5647132..5647572 (-) 441 WP_058176296.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA30_RS26625 (PALA30_05242) lspA 5647565..5648074 (-) 510 WP_003094728.1 signal peptidase II -
  PALA30_RS26630 (PALA30_05243) ileS 5648067..5650898 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=683799 PALA30_RS26610 WP_003094721.1 5645630..5646055(+) (comF) [Pseudomonas aeruginosa strain PALA30]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=683799 PALA30_RS26610 WP_003094721.1 5645630..5646055(+) (comF) [Pseudomonas aeruginosa strain PALA30]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383