Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA24_RS28820 Genome accession   NZ_CP110344
Coordinates   6164176..6164700 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PALA24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6159176..6169700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA24_RS28805 (PALA24_05764) aroB 6160292..6161398 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  PALA24_RS28810 (PALA24_05765) aroK 6161448..6161966 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA24_RS28815 (PALA24_05766) pilQ 6161978..6164122 (-) 2145 WP_003121202.1 type 4a pilus secretin PilQ Machinery gene
  PALA24_RS28820 (PALA24_05767) comL/pilP 6164176..6164700 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA24_RS28825 (PALA24_05768) pilO 6164697..6165320 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA24_RS28830 (PALA24_05769) pilN 6165317..6165913 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA24_RS28835 (PALA24_05770) pilM 6165913..6166977 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA24_RS28840 (PALA24_05771) - 6167162..6169633 (+) 2472 WP_116803732.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=683703 PALA24_RS28820 WP_003095836.1 6164176..6164700(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA24]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=683703 PALA24_RS28820 WP_003095836.1 6164176..6164700(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA24]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362