Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA24_RS14405 Genome accession   NZ_CP110344
Coordinates   3011670..3012095 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PALA24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3006670..3017095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA24_RS14385 (PALA24_02864) ileS 3006827..3009658 (+) 2832 WP_003119417.1 isoleucine--tRNA ligase -
  PALA24_RS14390 (PALA24_02865) lspA 3009651..3010160 (+) 510 WP_010792231.1 signal peptidase II -
  PALA24_RS14395 (PALA24_02866) fkpB 3010153..3010593 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA24_RS14400 (PALA24_02867) ispH 3010679..3011623 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA24_RS14405 (PALA24_02868) comF 3011670..3012095 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PALA24_RS14410 (PALA24_02869) pilY2 3012092..3012439 (-) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA24_RS14415 (PALA24_02870) pilY1 3012441..3015932 (-) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -
  PALA24_RS14420 (PALA24_02871) pilX 3015944..3016531 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=683664 PALA24_RS14405 WP_003094721.1 3011670..3012095(-) (comF) [Pseudomonas aeruginosa strain PALA24]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=683664 PALA24_RS14405 WP_003094721.1 3011670..3012095(-) (comF) [Pseudomonas aeruginosa strain PALA24]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383