Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   NOV96_RS08825 Genome accession   NZ_CP110141
Coordinates   1790824..1791612 (-) Length   262 a.a.
NCBI ID   WP_013730143.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS030     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785824..1796612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV96_RS08805 (NOV96_08805) - 1786476..1787765 (-) 1290 Protein_1713 IS4-like element ISSsu2 family transposase -
  NOV96_RS08810 (NOV96_08810) rplS 1787895..1788242 (-) 348 WP_011921928.1 50S ribosomal protein L19 -
  NOV96_RS08815 (NOV96_08815) - 1788800..1789988 (-) 1189 Protein_1715 IS110 family transposase -
  NOV96_RS08820 (NOV96_08820) - 1790271..1790822 (-) 552 WP_024376330.1 cysteine hydrolase family protein -
  NOV96_RS08825 (NOV96_08825) codY 1790824..1791612 (-) 789 WP_013730143.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  NOV96_RS08830 (NOV96_08830) - 1792083..1793297 (-) 1215 WP_002937606.1 pyridoxal phosphate-dependent aminotransferase -
  NOV96_RS08835 (NOV96_08835) - 1793452..1793904 (+) 453 WP_004194294.1 universal stress protein -
  NOV96_RS08840 (NOV96_08840) - 1793920..1795285 (-) 1366 Protein_1720 Cof-type HAD-IIB family hydrolase -
  NOV96_RS08845 (NOV96_08845) - 1795355..1796314 (+) 960 WP_014636805.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29263.33 Da        Isoelectric Point: 4.6797

>NTDB_id=683355 NOV96_RS08825 WP_013730143.1 1790824..1791612(-) (codY) [Streptococcus suis strain WUSS030]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMSYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELAGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=683355 NOV96_RS08825 WP_013730143.1 1790824..1791612(-) (codY) [Streptococcus suis strain WUSS030]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCTATTGCTGAACATCTATCAGCTATTATTGATTGCAATTCTTGTATTATTAATAGCGAAGGTGAAGTTTTGG
GATACCACATGAGTTATGAGACAAACAATGATCGTGTGGAAGAATTTTTCCAAAACAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCACG
CTCGACTTATCCAAACGGGCTGACAACGATAGCGCCTATCCACGTAACGGGGATTCGTTTTGGTTCGCTTATTATTTGGC
GGAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACAGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACACTATCTTACTCAGA
AATGAAAGCAGTTGCAGCTATTTTGGGTGAATTGGCTGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTCATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

58.779

100

0.588
  codY Bacillus subtilis subsp. subtilis str. 168

52.033

93.893

0.489