Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   NOV96_RS06025 Genome accession   NZ_CP110141
Coordinates   1193911..1195680 (+) Length   589 a.a.
NCBI ID   WP_240016635.1    Uniprot ID   -
Organism   Streptococcus suis strain WUSS030     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1188911..1200680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NOV96_RS05995 (NOV96_05995) - 1189722..1190477 (+) 756 WP_013730347.1 class I SAM-dependent methyltransferase -
  NOV96_RS06000 (NOV96_06000) pcp 1190474..1191121 (+) 648 WP_013730348.1 pyroglutamyl-peptidase I -
  NOV96_RS06005 (NOV96_06005) - 1191121..1191429 (+) 309 WP_013730349.1 DUF4298 domain-containing protein -
  NOV96_RS06010 (NOV96_06010) rpsP 1191554..1191826 (+) 273 WP_240016634.1 30S ribosomal protein S16 -
  NOV96_RS06015 (NOV96_06015) - 1191848..1192090 (+) 243 WP_012028079.1 KH domain-containing protein -
  NOV96_RS06020 (NOV96_06020) rcrP 1192166..1193902 (+) 1737 WP_013730350.1 ABC transporter ATP-binding protein Regulator
  NOV96_RS06025 (NOV96_06025) rcrQ 1193911..1195680 (+) 1770 WP_240016635.1 ABC transporter ATP-binding protein Regulator
  NOV96_RS06030 (NOV96_06030) - 1195724..1196647 (-) 924 WP_002938584.1 polysaccharide deacetylase family protein -
  NOV96_RS06035 (NOV96_06035) - 1196752..1198038 (+) 1287 WP_002938586.1 homoserine dehydrogenase -
  NOV96_RS06040 (NOV96_06040) thrB 1198042..1198902 (+) 861 WP_002938588.1 homoserine kinase -
  NOV96_RS06045 (NOV96_06045) - 1199171..1200373 (-) 1203 WP_002935153.1 IS110 family transposase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65909.85 Da        Isoelectric Point: 5.2701

>NTDB_id=683338 NOV96_RS06025 WP_240016635.1 1193911..1195680(+) (rcrQ) [Streptococcus suis strain WUSS030]
MKNRSVFTRVWDYLRRYQSSVFLAIFLKTISAVMNALEPFVLGLIITELTKNLLDIANGVEGAQINYSYIAIMLAIYALR
ALLYEIGAYGSNYFMTKAVQGATKELRQDLSHKINKIPVSYFDKHQYGDLLGRFTSDVETVSNALQQSFLQLVNAVLTLS
LAIFMCFWLDVSLALVVITLVPVTYFGSKFVMGKSQPYFKQQADALGRLNGFVQENLTGFNVLKLYGREEISTEEFRQIT
ADLQEVGFKASFMSGLLMPLVHGFSNIAYVVVALLSGLKVLAGTLTVGNMQAFVQYVWQISQPVQTLTQLAPQLQSAKSS
FERIFSVLDELDEEDANALELTESLTGQVSFEQVEFGYSEDKPLIRNFNLDVKPGEMVAIVGPTGAGKTTLINLLMRFYD
VTSGAIKVDGQDIRNLSRQSYRSQFGMVLQDAWLYEGTIKENLRFGRLDATDEEIVEAAKAANVDHFIRTLPGGYNMEMN
QESSNISQGQKQLLTIARALLADPAILILDEATSSVDTRLELLIQKAMKRLMKGRTSFVIAHRLSTIQEADKILVLKDGQ
IIEQGNHESLLADKGFYYNLYQSQFSESK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=683338 NOV96_RS06025 WP_240016635.1 1193911..1195680(+) (rcrQ) [Streptococcus suis strain WUSS030]
ATGAAGAATAGATCAGTATTTACCCGTGTTTGGGACTATTTGCGTCGTTACCAATCTTCTGTATTTTTAGCCATTTTTCT
AAAGACCATCAGTGCAGTTATGAATGCCTTAGAACCCTTTGTGCTGGGGCTTATCATTACAGAATTGACCAAGAATTTGT
TGGATATTGCTAATGGAGTAGAAGGAGCGCAGATTAACTATTCCTACATTGCCATCATGCTTGCCATCTATGCCCTTCGC
GCCCTTCTATATGAAATCGGTGCCTACGGTTCTAACTATTTTATGACCAAGGCAGTGCAGGGAGCAACTAAGGAACTACG
TCAGGATTTGAGCCACAAAATTAACAAGATTCCAGTATCTTATTTTGACAAGCACCAGTATGGTGATTTACTCGGACGTT
TTACAAGCGATGTGGAGACTGTTTCAAACGCCCTGCAACAAAGTTTTCTCCAGCTAGTCAATGCCGTTCTGACCCTCTCT
CTAGCCATTTTCATGTGTTTCTGGTTGGATGTATCCCTAGCACTTGTAGTCATAACCTTGGTTCCAGTGACCTATTTTGG
TTCTAAGTTTGTCATGGGCAAATCCCAGCCATATTTCAAGCAGCAGGCTGATGCCCTAGGTCGTTTGAACGGCTTTGTCC
AAGAAAATCTGACTGGTTTTAACGTTCTCAAACTCTACGGCCGTGAAGAAATTTCTACAGAAGAGTTTCGCCAGATTACC
GCAGATTTGCAGGAAGTTGGTTTCAAGGCTAGTTTCATGTCTGGTTTGCTCATGCCTCTAGTTCACGGCTTCTCAAACAT
CGCCTACGTTGTCGTCGCCCTGCTATCTGGATTGAAAGTTCTTGCAGGTACATTGACGGTGGGTAATATGCAGGCCTTCG
TCCAATACGTCTGGCAGATTTCTCAGCCAGTCCAAACCTTGACCCAATTGGCACCACAGTTGCAGTCTGCCAAATCTTCC
TTTGAACGCATCTTTTCAGTCCTAGATGAGCTTGATGAAGAAGACGCCAATGCGCTGGAGTTGACAGAAAGTCTGACAGG
ACAAGTCAGCTTTGAACAGGTCGAATTTGGCTATTCAGAAGACAAGCCGCTTATCCGTAACTTTAATCTTGATGTTAAGC
CAGGTGAAATGGTTGCTATCGTTGGACCAACGGGGGCAGGTAAGACAACCCTTATCAACTTGCTCATGCGTTTCTATGAT
GTCACATCAGGTGCTATCAAGGTAGATGGGCAGGATATTCGAAATCTTTCACGTCAATCCTACCGTAGTCAATTTGGCAT
GGTCTTGCAGGATGCTTGGCTCTATGAAGGGACCATCAAGGAAAACCTGCGTTTTGGACGTCTGGATGCGACGGATGAGG
AAATTGTGGAGGCTGCTAAAGCTGCCAACGTTGACCATTTTATCCGTACCCTGCCTGGTGGTTATAATATGGAAATGAAC
CAGGAATCCAGCAATATTTCCCAAGGTCAGAAACAGCTTTTGACCATTGCGCGTGCCTTGTTGGCGGATCCTGCTATTCT
GATTCTTGACGAAGCGACTTCTTCAGTTGATACCCGTTTGGAACTCTTGATTCAAAAGGCTATGAAACGGTTGATGAAAG
GGCGGACAAGTTTCGTCATCGCTCATCGCTTATCTACCATTCAGGAAGCTGATAAGATTTTGGTCTTGAAAGATGGACAG
ATTATCGAACAAGGTAACCATGAAAGTCTTTTGGCAGACAAAGGTTTCTATTATAATCTTTATCAAAGCCAGTTTAGTGA
ATCCAAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(366-514)

ABC transporter transmembrane region (ABC_membrane)

(21-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.559

100

0.436