Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M1S16_RS01600 Genome accession   NZ_CP096729
Coordinates   341167..341727 (+) Length   186 a.a.
NCBI ID   WP_085916952.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 5729     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 339553..340640 341167..341727 flank 527


Gene organization within MGE regions


Location: 339553..341727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S16_RS01590 (M1S16_01590) - 339553..340640 (+) 1088 WP_249375126.1 IS4-like element ISAba1 family transposase -
  M1S16_RS01595 (M1S16_01595) fimU 340700..341173 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  M1S16_RS01600 (M1S16_01600) pilV 341167..341727 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.13 Da        Isoelectric Point: 8.2254

>NTDB_id=683293 M1S16_RS01600 WP_085916952.1 341167..341727(+) (pilV) [Acinetobacter baumannii strain 5729]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGRTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=683293 M1S16_RS01600 WP_085916952.1 341167..341727(+) (pilV) [Acinetobacter baumannii strain 5729]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAGAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409