Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   OKW88_RS20895 Genome accession   NZ_CP110105
Coordinates   4064942..4065859 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain CF03     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 4059942..4070859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS20880 (OKW88_20845) trpS 4060522..4061514 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  OKW88_RS20885 (OKW88_20850) oppA 4062258..4063895 (+) 1638 WP_015252360.1 oligopeptide ABC transporter substrate-binding protein OppA -
  OKW88_RS20890 (OKW88_20855) oppB 4064003..4064938 (+) 936 WP_003245554.1 oligopeptide ABC transporter permease OppB -
  OKW88_RS20895 (OKW88_20860) amiD 4064942..4065859 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  OKW88_RS20900 (OKW88_20865) oppD 4065864..4066940 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  OKW88_RS20905 (OKW88_20870) oppF 4066942..4067859 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  OKW88_RS20910 (OKW88_20875) yjbB 4067965..4069182 (+) 1218 WP_095843630.1 MFS transporter -
  OKW88_RS20915 (OKW88_20880) yjbC 4069345..4069923 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  OKW88_RS20920 (OKW88_20885) spx 4070104..4070499 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=683155 OKW88_RS20895 WP_003232954.1 4064942..4065859(+) (amiD) [Bacillus subtilis strain CF03]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=683155 OKW88_RS20895 WP_003232954.1 4064942..4065859(+) (amiD) [Bacillus subtilis strain CF03]
ATGCAGAACATTCCAAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATCATTATCGTACTTATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCGCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGACGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCCGCTGTTCTTGATTTGCTGATCGGTGTTATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACAGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCAATTTTCACAGAAGCC
TTTTTAAGCTATTTGGGACTTGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364