Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   JLH08_RS05925 Genome accession   NZ_AP022540
Coordinates   1246579..1247316 (-) Length   245 a.a.
NCBI ID   WP_200930430.1    Uniprot ID   -
Organism   Escherichia coli strain THO-010     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1241579..1252316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JLH08_RS05895 (THOESC010_11580) yfiL 1241737..1242102 (-) 366 WP_001301878.1 DUF2799 domain-containing protein -
  JLH08_RS05900 (THOESC010_11590) aroF 1242312..1243382 (+) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  JLH08_RS05905 (THOESC010_11600) tyrA 1243393..1244514 (+) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  JLH08_RS05910 (THOESC010_11610) pheA 1244557..1245717 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  JLH08_RS05915 pheL 1245816..1245863 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  JLH08_RS05920 (THOESC010_11620) raiA 1245967..1246308 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  JLH08_RS05925 (THOESC010_11630) comL 1246579..1247316 (-) 738 WP_200930430.1 outer membrane protein assembly factor BamD Machinery gene
  JLH08_RS05930 (THOESC010_11640) rluD 1247451..1248431 (+) 981 WP_000079091.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  JLH08_RS05935 (THOESC010_11650) yfiH 1248428..1249159 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  JLH08_RS05940 (THOESC010_11660) clpC 1249289..1251862 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27859.42 Da        Isoelectric Point: 6.4874

>NTDB_id=68249 JLH08_RS05925 WP_200930430.1 1246579..1247316(-) (comL) [Escherichia coli strain THO-010]
MTRMKYLVAAATLSLFLTGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=68249 JLH08_RS05925 WP_200930430.1 1246579..1247316(-) (comL) [Escherichia coli strain THO-010]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGACGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGAGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment