Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   OHM47_RS08485 Genome accession   NZ_CP109939
Coordinates   1669900..1670688 (-) Length   262 a.a.
NCBI ID   WP_023369388.1    Uniprot ID   -
Organism   Streptococcus suis strain ID36054     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1664900..1675688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM47_RS08460 (OHM47_08460) - 1665048..1666325 (-) 1278 WP_002938352.1 uracil-xanthine permease family protein -
  OHM47_RS08465 (OHM47_08465) - 1666719..1667566 (+) 848 WP_114876550.1 IS630 family transposase -
  OHM47_RS08470 (OHM47_08470) - 1667662..1668336 (-) 675 WP_012774968.1 hydrolase -
  OHM47_RS08475 (OHM47_08475) rplS 1668522..1668869 (-) 348 WP_011921928.1 50S ribosomal protein L19 -
  OHM47_RS08480 (OHM47_08480) - 1669347..1669898 (-) 552 WP_029175305.1 cysteine hydrolase family protein -
  OHM47_RS08485 (OHM47_08485) codY 1669900..1670688 (-) 789 WP_023369388.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  OHM47_RS08490 (OHM47_08490) - 1670840..1672054 (-) 1215 WP_014637482.1 pyridoxal phosphate-dependent aminotransferase -
  OHM47_RS08495 (OHM47_08495) - 1672209..1672661 (+) 453 WP_004195772.1 universal stress protein -
  OHM47_RS08500 (OHM47_08500) - 1672677..1674042 (-) 1366 Protein_1648 Cof-type HAD-IIB family hydrolase -
  OHM47_RS08505 (OHM47_08505) - 1674111..1675070 (+) 960 WP_024394819.1 asparaginase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29334.37 Da        Isoelectric Point: 4.6190

>NTDB_id=682391 OHM47_RS08485 WP_023369388.1 1669900..1670688(-) (codY) [Streptococcus suis strain ID36054]
MTTLLEKTRNITSILKRSEEQLAEELPYNAIAEHLSAIIDCNSCIINSEGEVLGYHMNYETNNDRVEEFFQNKQFPEGYV
KAVAQVYDTQVNLPVESELTAIPVESRSTYPNGLTTIAPIHVTGIRFGSLIIWRNDEQFHDDDLILVEIAATVVGIQLLN
FQREEDEKNIRRRAAVNMAVNTLSYSEMKAVAAILGELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIPAIFDEIKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=682391 OHM47_RS08485 WP_023369388.1 1669900..1670688(-) (codY) [Streptococcus suis strain ID36054]
ATGACAACATTATTAGAGAAGACACGGAATATTACTTCTATTTTGAAGCGTTCCGAAGAGCAATTGGCAGAAGAATTGCC
TTACAATGCCATTGCTGAGCATTTATCAGCTATTATTGACTGCAACTCGTGCATCATTAATAGTGAAGGTGAAGTTTTGG
GATACCACATGAACTATGAGACGAACAATGATCGTGTGGAAGAATTTTTTCAAAATAAACAATTCCCAGAAGGATATGTA
AAAGCAGTTGCGCAGGTTTACGATACGCAGGTTAATTTGCCTGTCGAGAGCGAGTTGACTGCCATCCCTGTCGAATCAAG
ATCGACTTATCCAAATGGTCTGACAACGATAGCGCCTATCCATGTGACGGGAATTCGTTTTGGTTCGCTTATTATTTGGC
GAAATGATGAGCAGTTTCACGATGATGATTTGATTTTGGTTGAGATTGCGGCAACGGTAGTTGGTATTCAGTTACTTAAT
TTCCAACGGGAAGAAGACGAGAAGAATATCCGTCGTCGTGCGGCAGTTAATATGGCGGTAAATACGCTGTCTTACTCAGA
AATGAAGGCAGTTGCAGCTATTTTGGGTGAATTGGATGGCAATGAGGGGCAATTGACTGCTTCTGTGATTGCAGATCGTA
TCGGTATTACACGCTCGGTGATTGTGAATGCACTGCGTAAGTTGGAGAGTGCAGGGATTATTGAAAGTCGTTCTTTGGGA
ATGAAGGGGACTTATTTGAAAGTTCTTATCCCAGCTATTTTTGATGAAATTAAGAAACGTGACTACTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(202-258)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

59.16

100

0.592
  codY Bacillus subtilis subsp. subtilis str. 168

52.846

93.893

0.496