Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   M1S56_RS01590 Genome accession   NZ_CP096681
Coordinates   340044..340604 (+) Length   186 a.a.
NCBI ID   WP_085916952.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 6080     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 335044..345604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S56_RS01565 (M1S56_01565) - 337186..337315 (-) 130 Protein_298 hypothetical protein -
  M1S56_RS01570 (M1S56_01570) rpoZ 337354..337632 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  M1S56_RS01575 (M1S56_01575) gmk 337705..338334 (-) 630 WP_000015937.1 guanylate kinase -
  M1S56_RS01580 (M1S56_01580) ispH 338457..339407 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  M1S56_RS01585 (M1S56_01585) fimU 339577..340050 (+) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  M1S56_RS01590 (M1S56_01590) pilV 340044..340604 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  M1S56_RS01595 (M1S56_01595) pilW 340605..341606 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  M1S56_RS01600 (M1S56_01600) pilX 341603..342421 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20190.13 Da        Isoelectric Point: 8.2254

>NTDB_id=682253 M1S56_RS01590 WP_085916952.1 340044..340604(+) (pilV) [Acinetobacter baumannii strain 6080]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGRTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=682253 M1S56_RS01590 WP_085916952.1 340044..340604(+) (pilV) [Acinetobacter baumannii strain 6080]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTGCGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTCGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAGAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

99.462

100

0.995
  pilV Acinetobacter baylyi ADP1

40.86

100

0.409