Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   NT398_RS04500 Genome accession   NZ_CP109933
Coordinates   905928..908288 (-) Length   786 a.a.
NCBI ID   WP_284592461.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SASWT1215     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 900928..913288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NT398_RS04480 (NT398_04485) - 902398..903012 (-) 615 WP_000079317.1 succinate dehydrogenase cytochrome b558 subunit -
  NT398_RS04485 (NT398_04490) uvrC 903336..905117 (-) 1782 WP_000390524.1 excinuclease ABC subunit UvrC Machinery gene
  NT398_RS04490 (NT398_04495) - 905283..905378 (+) 96 WP_001788625.1 hypothetical protein -
  NT398_RS04495 (NT398_04500) trxA 905441..905755 (-) 315 WP_001018928.1 thioredoxin -
  NT398_RS04500 (NT398_04505) mutS/mutS2 905928..908288 (-) 2361 WP_284592461.1 endonuclease MutS2 Machinery gene
  NT398_RS04505 (NT398_04510) polX 908285..909997 (-) 1713 WP_000161938.1 DNA polymerase/3'-5' exonuclease PolX -
  NT398_RS04510 (NT398_04515) - 910070..910591 (-) 522 WP_000234068.1 CvpA family protein -
  NT398_RS04515 (NT398_04520) zapA 910599..910858 (-) 260 Protein_863 cell division protein ZapA -
  NT398_RS04520 (NT398_04525) rnhC 911228..912166 (+) 939 WP_001284282.1 ribonuclease HIII -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 89185.81 Da        Isoelectric Point: 6.0129

>NTDB_id=682174 NT398_RS04500 WP_284592461.1 905928..908288(-) (mutS/mutS2) [Staphylococcus aureus strain SASWT1215]
MEGFYEKKALDVLEFEKIKSLVANETISDLGLEKVNQMMPATNFETVVFQMEETDEIAQIYNKHRLPSLSGLSKVSAFIH
RADIGGVLNVSELNLIKRLIQVQNQFKTFYNQLVEEDEGVKYPILDDKMNQLPVLTDLFHQINETCDTYDLYDNASYELQ
GIRSKISSTNQRIRQNLDRIVKSQANQKKLSDAIVTVRNERNVIPVKAEYRQDFNGIVHDQSASGQTLYIEPSSVVEMNN
QISRLRHDEAIEKERVLTQLTGYVAADKDALLVAEQVMGQLDFLIAKARYSRSIKGTKPIFKEERTVYLPKAYHPLLNRE
TVVANTIEFMEDIETVIITGPNTGGKTVTLKTLGLIIVMAQSGLLIPTLDGSQLSVFKNVYCDIGDEQSIEQSLSTFSSH
MTNIVEILKHADKHSLVLFDELGAGTDPSEGAALAMSILDHVRKIGSLVMATTHYPELKAYSYNREGVMNASVEFDVDTL
SPTYKLLMGVPGRSNAFDISKKLGLSLNIINKAKTMIGTDEKEINEMIESLERNYKRVETQRLELDRLVKEAEQVHDDLS
KQYQQFQNYEKSLIEEAKEKANQKIKAATKEADDIIKDLRQLREQKGADVKEHELIDKKKRLDDHYEAKSIKQNVQKQKY
DKIVAGDEVKVLYYGQKGEVLEIVNDEEAIVQMGIIKMKLPIEDLEKKQKEKVKPTKMVTRQNRQTIKTELDLRGYRYED
ALIELDQYLDQAVLSNYEQVYIIHGKGTGALQKGVQQHLKKHKSVSDFRGGMPSEGGFGVTVATLK

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=682174 NT398_RS04500 WP_284592461.1 905928..908288(-) (mutS/mutS2) [Staphylococcus aureus strain SASWT1215]
ATAGAGGGATTTTATGAGAAAAAAGCATTAGACGTCTTAGAATTTGAAAAAATAAAATCACTCGTTGCCAATGAAACTAT
TAGTGACTTAGGCTTGGAAAAGGTCAATCAAATGATGCCAGCTACTAATTTTGAAACGGTTGTTTTTCAAATGGAAGAAA
CGGATGAGATTGCTCAAATCTATAATAAGCATCGTTTACCAAGCTTGAGTGGCTTATCTAAAGTATCAGCATTCATTCAT
CGCGCTGATATTGGCGGCGTTTTAAATGTATCAGAGCTTAACTTGATAAAAAGATTAATTCAAGTACAAAATCAATTTAA
GACATTTTATAATCAATTGGTTGAAGAAGATGAAGGTGTTAAATACCCAATATTAGATGACAAGATGAATCAATTACCTG
TGTTAACTGATCTTTTTCATCAAATAAATGAAACATGCGATACGTATGATTTATATGATAATGCGAGTTATGAATTGCAA
GGGATTAGAAGTAAAATTTCTAGCACGAATCAACGTATTAGACAAAATTTGGACCGTATTGTTAAAAGCCAAGCAAATCA
GAAAAAATTATCAGATGCTATTGTAACAGTTAGGAATGAAAGAAACGTTATACCTGTCAAAGCTGAATATCGACAAGATT
TTAATGGGATTGTACATGATCAATCTGCTTCAGGACAAACATTGTATATTGAGCCATCATCAGTTGTTGAAATGAATAAT
CAAATTAGTCGATTACGTCATGACGAAGCAATTGAAAAAGAACGCGTTTTAACGCAACTAACTGGTTATGTGGCTGCGGA
CAAAGATGCACTACTTGTGGCAGAACAAGTCATGGGGCAGTTAGATTTTTTAATCGCAAAAGCGAGATATAGTAGAAGTA
TTAAAGGAACAAAGCCGATATTTAAAGAGGAACGTACTGTATATTTACCTAAAGCATACCATCCATTATTAAATCGTGAG
ACTGTTGTAGCTAATACCATCGAATTTATGGAAGATATTGAAACGGTAATTATTACAGGACCGAATACAGGTGGTAAAAC
TGTAACATTAAAAACATTAGGTTTAATTATTGTTATGGCTCAATCAGGATTGTTGATTCCCACACTTGATGGTAGTCAGT
TAAGTGTATTTAAAAATGTATATTGCGATATCGGAGATGAACAATCAATAGAACAATCATTATCAACTTTTTCATCTCAT
ATGACGAATATAGTTGAAATTTTAAAGCATGCAGACAAACATAGTTTAGTTTTATTTGATGAATTAGGTGCAGGTACAGA
TCCAAGTGAAGGTGCTGCATTAGCAATGAGCATTTTAGATCATGTTAGAAAAATTGGTTCTCTAGTAATGGCAACGACGC
ACTATCCTGAACTTAAAGCATATAGTTATAATCGAGAAGGCGTTATGAATGCGAGTGTAGAATTTGATGTAGATACTTTG
AGTCCAACGTATAAGTTATTAATGGGTGTGCCGGGTCGTTCAAATGCTTTTGACATTTCTAAAAAGTTAGGTCTTAGTTT
GAATATTATTAATAAGGCTAAGACGATGATTGGTACTGATGAAAAAGAAATAAATGAAATGATTGAATCATTAGAGCGTA
ATTATAAACGTGTAGAGACACAGAGGTTAGAACTGGACCGTCTTGTAAAAGAAGCGGAGCAAGTGCATGATGATTTATCT
AAGCAGTATCAACAATTCCAAAATTATGAAAAGTCTCTAATAGAGGAAGCGAAAGAAAAAGCAAATCAGAAGATTAAAGC
TGCAACAAAAGAAGCTGACGATATTATTAAAGACTTAAGACAATTGCGTGAACAAAAAGGTGCAGATGTTAAAGAACATG
AATTGATTGATAAGAAGAAACGATTAGATGATCATTATGAAGCGAAATCTATAAAGCAAAATGTACAAAAGCAAAAATAC
GATAAAATTGTTGCTGGTGATGAAGTAAAAGTATTATATTACGGTCAAAAGGGTGAAGTTTTAGAAATTGTCAATGATGA
AGAAGCAATTGTTCAAATGGGAATTATTAAAATGAAGTTACCTATTGAAGATTTAGAGAAAAAACAAAAAGAAAAAGTTA
AGCCAACGAAAATGGTTACACGTCAAAATCGTCAAACAATTAAAACTGAACTTGACTTACGAGGCTATCGTTATGAGGAT
GCTTTAATTGAACTAGATCAATATTTAGATCAAGCCGTTTTAAGTAATTACGAACAAGTTTATATCATTCATGGTAAAGG
TACAGGTGCACTTCAAAAAGGTGTACAACAACATTTGAAGAAGCATAAAAGTGTTAGTGACTTTAGAGGTGGTATGCCAA
GCGAAGGTGGATTTGGCGTTACCGTTGCAACACTAAAATAA

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(336-516)

MutS2 and Smr-associated SH3 domain (MSSS)

(645-685)

Smr domain (Smr)

(711-786)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

49.619

100

0.497