Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA43_RS28905 Genome accession   NZ_CP109932
Coordinates   6222006..6222431 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PALA43     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6217006..6227431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA43_RS28890 (PALA43_05739) pilX 6217570..6218157 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  PALA43_RS28895 (PALA43_05740) pilY1 6218169..6221660 (+) 3492 WP_213154590.1 type 4a pilus biogenesis protein PilY1 -
  PALA43_RS28900 (PALA43_05741) pilY2 6221662..6222009 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA43_RS28905 (PALA43_05742) comF 6222006..6222431 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  PALA43_RS28910 (PALA43_05743) ispH 6222478..6223422 (-) 945 WP_003134939.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA43_RS28915 (PALA43_05744) fkpB 6223508..6223948 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA43_RS28920 (PALA43_05745) lspA 6223941..6224450 (-) 510 WP_003102615.1 signal peptidase II -
  PALA43_RS28925 (PALA43_05746) ileS 6224443..6227274 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=682127 PALA43_RS28905 WP_003094721.1 6222006..6222431(+) (comF) [Pseudomonas aeruginosa strain PALA43]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=682127 PALA43_RS28905 WP_003094721.1 6222006..6222431(+) (comF) [Pseudomonas aeruginosa strain PALA43]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTAACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383