Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   M0696_RS13790 Genome accession   NZ_CP096590
Coordinates   2702200..2704560 (-) Length   786 a.a.
NCBI ID   WP_248602065.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2697200..2709560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS13770 (M0696_13770) - 2697278..2698831 (+) 1554 WP_166850195.1 SH3 domain-containing protein -
  M0696_RS13775 (M0696_13775) dtd 2698856..2699296 (-) 441 WP_166850192.1 D-aminoacyl-tRNA deacylase -
  M0696_RS13780 (M0696_13780) relA 2699309..2701513 (-) 2205 WP_248602064.1 GTP diphosphokinase -
  M0696_RS13785 (M0696_13785) - 2701682..2702194 (-) 513 WP_019715222.1 adenine phosphoribosyltransferase -
  M0696_RS13790 (M0696_13790) recJ 2702200..2704560 (-) 2361 WP_248602065.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  M0696_RS13795 (M0696_13795) - 2704627..2704959 (-) 333 WP_019715224.1 lipopolysaccharide assembly LapA domain-containing protein -
  M0696_RS13800 (M0696_13800) - 2705039..2705536 (-) 498 WP_019715225.1 cation:proton antiporter regulatory subunit -
  M0696_RS13805 (M0696_13805) secDF 2705693..2707906 (-) 2214 WP_248602066.1 protein translocase subunit SecDF -
  M0696_RS13810 (M0696_13810) comN 2707945..2708241 (-) 297 WP_003222684.1 post-transcriptional regulator ComN -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88089.58 Da        Isoelectric Point: 5.0059

>NTDB_id=681972 M0696_RS13790 WP_248602065.1 2702200..2704560(-) (recJ) [Bacillus rugosus strain A78.1]
MLASKMRWEIQRPDQDKVKSLTEQLHITPLVASLLVKRGFDTAESARLFLHTKDADFYDPFEMKGMKEAADRIKQAISQQ
EQIMIYGDYDADGVTSTSVMLHTLQKLSAQVDFYIPDRFKEGYGPNEQAFRSIKERGYSLIITVDTGIAAVHEAKVAKEL
GLDVIITDHHEPGPELPDVHAIVHPKQPGCTYPFKELAGVGVAFKLAHALLGELPDELLDLAAIGTIADLVPLHGENRLI
ATLGLERLRRTNRLGLKELVKLSGGDIGEANEETVGFQIAPRLNAVGRIEQADPAVHLLMSEDSFEAEELAAEIDQLNKE
RQKMVSKMTDEAIEMVEQQGLDQTAIVVAKSGWNPGVVGIVASKLVDRFYRPAIVLGIDEEKGIAKGSARSIRGFNLFES
LSECRDILPHFGGHPMAAGMTLNAEDVPDLRHRLNEIADNTLTEEDFIPVQEVDLVCGVEDITVESITEMNLLSPFGMLN
PKPHVLVENAVLEDVRKIGANKNHVKMTVRNESSQLDCVGFNKGELEEGIVPGSRISIVGEMSINEWNNRKKPQLMIKDA
AVSEWQLFDLRGKRMWEDTVSVLPSAKRAIVSFKEDSTTLLQTEDLRREVHVISSEDQAKAFDLDGGYIVLLDPPPSLDM
LARLLEGKAPERIYFIFLNQEDHFLSTFPARDHFKWYYAFLLKRGAFDVKKHGSDLARHKGWSVETINFMTKVFFDLGFV
KIENGVLSVVSGVKKRDLTDSQTYQAKQQLMELDQKLNYSSAEELKEWLNKLMKQDSEAYESTRRT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=681972 M0696_RS13790 WP_248602065.1 2702200..2704560(-) (recJ) [Bacillus rugosus strain A78.1]
ATGTTAGCGTCAAAAATGCGATGGGAAATCCAGCGACCAGATCAGGATAAGGTCAAATCACTCACAGAACAATTGCATAT
AACACCTCTTGTTGCGTCCCTGCTTGTAAAAAGAGGCTTTGATACGGCAGAAAGCGCAAGGCTGTTTTTACATACAAAGG
ATGCCGATTTTTATGATCCTTTCGAAATGAAAGGCATGAAAGAAGCGGCAGATCGTATAAAACAGGCGATATCACAACAA
GAACAGATTATGATATATGGCGATTATGACGCCGATGGAGTTACCAGTACGTCAGTGATGCTTCACACACTGCAAAAGCT
GTCGGCTCAAGTTGATTTTTATATACCTGACCGCTTTAAAGAAGGATATGGCCCTAATGAACAGGCATTTCGTTCGATTA
AAGAGCGGGGCTACTCTCTGATTATTACAGTTGATACAGGAATTGCCGCTGTGCATGAAGCGAAGGTAGCAAAGGAACTC
GGGCTGGATGTCATTATTACCGATCACCATGAGCCGGGACCGGAGCTTCCGGATGTCCATGCGATCGTCCACCCGAAGCA
GCCAGGCTGCACCTACCCGTTTAAAGAACTTGCCGGGGTCGGGGTCGCGTTTAAGCTCGCCCACGCTTTATTGGGCGAAC
TCCCGGATGAACTGCTTGACCTGGCGGCAATCGGCACTATTGCCGATCTTGTCCCGTTGCATGGCGAAAACAGATTAATT
GCAACACTAGGACTTGAAAGGCTTCGTCGGACGAATCGACTGGGCTTAAAAGAGCTGGTCAAGCTGTCAGGCGGAGACAT
CGGAGAAGCGAACGAAGAAACTGTCGGGTTCCAAATAGCACCAAGGCTGAATGCCGTCGGACGAATCGAACAGGCGGATC
CCGCTGTTCATTTGCTCATGTCAGAGGATTCGTTTGAAGCGGAAGAGCTTGCCGCTGAAATTGACCAGCTGAACAAAGAG
CGCCAAAAAATGGTTAGTAAAATGACGGATGAAGCGATTGAAATGGTTGAACAGCAAGGTCTCGATCAAACTGCTATTGT
TGTGGCCAAATCCGGGTGGAATCCAGGAGTCGTGGGGATTGTGGCTTCAAAGCTTGTGGACCGTTTCTACCGTCCGGCCA
TTGTGCTTGGCATTGATGAAGAAAAAGGGATTGCTAAAGGCTCGGCCCGAAGCATCAGAGGCTTTAACTTATTCGAGAGC
CTTTCAGAATGCAGAGATATTCTTCCACATTTCGGCGGCCACCCAATGGCTGCGGGAATGACGCTGAATGCCGAAGATGT
GCCGGATTTGCGACACAGGCTGAATGAAATAGCAGACAACACGCTTACGGAAGAGGATTTTATTCCCGTACAGGAAGTCG
ATCTTGTCTGCGGTGTCGAGGACATTACGGTTGAAAGCATCACAGAAATGAACCTGCTGTCCCCATTTGGCATGCTGAAC
CCGAAACCGCACGTCCTCGTAGAAAACGCTGTGCTGGAAGATGTCCGCAAGATCGGCGCTAATAAAAATCATGTGAAAAT
GACGGTCAGAAACGAGTCGTCTCAGCTTGATTGCGTTGGTTTTAATAAAGGTGAGCTAGAAGAAGGCATCGTCCCGGGTT
CAAGAATATCAATTGTCGGTGAGATGTCTATCAACGAATGGAACAATAGAAAAAAACCGCAGTTAATGATTAAGGATGCC
GCTGTTTCTGAATGGCAGCTGTTTGATTTAAGGGGAAAACGGATGTGGGAAGACACAGTTTCCGTCCTTCCATCTGCTAA
ACGGGCCATTGTCTCTTTCAAAGAAGACTCAACAACACTTCTTCAGACTGAAGACCTTCGCCGTGAAGTGCACGTCATCA
GCTCTGAGGATCAAGCGAAGGCGTTTGACCTTGATGGTGGATATATTGTATTGCTGGATCCGCCGCCTTCGTTGGACATG
CTCGCACGTTTGCTGGAAGGCAAGGCGCCTGAGCGGATATATTTCATTTTTCTCAATCAAGAGGACCACTTTTTATCAAC
ATTTCCCGCAAGAGACCACTTTAAATGGTATTATGCGTTTTTGCTGAAAAGAGGCGCTTTTGACGTAAAAAAACATGGTT
CAGATCTTGCGAGACATAAAGGCTGGTCTGTTGAAACAATCAATTTCATGACAAAGGTGTTTTTTGATCTAGGTTTTGTT
AAAATAGAGAATGGTGTGCTGTCTGTGGTTAGCGGAGTAAAGAAACGCGACTTAACGGACTCACAAACATATCAGGCAAA
ACAGCAGTTGATGGAATTGGATCAAAAGCTGAATTATTCTTCTGCTGAAGAGCTGAAGGAATGGCTGAATAAGCTGATGA
AACAAGATTCAGAGGCTTATGAAAGTACGAGGAGGACATAA

Domains

Predicted by InterproScan.

RecJ OB domain (RecJ_OB)

(453-559)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(566-769)

DHHA1 domain (DHHA1)

(315-437)

DHH family (DHH)

(82-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

97.201

100

0.972