Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   M0696_RS13715 Genome accession   NZ_CP096590
Coordinates   2685067..2687463 (-) Length   798 a.a.
NCBI ID   WP_248602063.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2680067..2692463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS13695 (M0696_13695) - 2682971..2684032 (-) 1062 WP_248602062.1 AI-2E family transporter -
  M0696_RS13700 (M0696_13700) - 2684130..2684261 (-) 132 WP_019715211.1 YrzQ family protein -
  M0696_RS13705 (M0696_13705) - 2684283..2684474 (-) 192 WP_003225893.1 hypothetical protein -
  M0696_RS13710 (M0696_13710) - 2684486..2685010 (-) 525 WP_166850221.1 PRC-barrel domain-containing protein -
  M0696_RS13715 (M0696_13715) recD2 2685067..2687463 (-) 2397 WP_248602063.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M0696_RS13720 (M0696_13720) - 2687488..2688108 (-) 621 WP_217501620.1 tetratricopeptide repeat protein -
  M0696_RS13725 (M0696_13725) mnmA 2688194..2689309 (-) 1116 WP_222143251.1 tRNA 2-thiouridine(34) synthase MnmA -
  M0696_RS13730 (M0696_13730) - 2689337..2690479 (-) 1143 WP_222143252.1 cysteine desulfurase family protein -
  M0696_RS13735 (M0696_13735) cymR 2690498..2690914 (-) 417 WP_166854618.1 cysteine metabolism transcriptional regulator CymR -
  M0696_RS13740 (M0696_13740) - 2691117..2692382 (+) 1266 WP_222143253.1 replication-associated recombination protein A -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 89205.87 Da        Isoelectric Point: 5.0306

>NTDB_id=681971 M0696_RS13715 WP_248602063.1 2685067..2687463(-) (recD2) [Bacillus rugosus strain A78.1]
MQQHPDQLKLEEEPYLKGTVNTVIYHNETNLYTVLKVKVTETSEAIEDKAVSVTGYFPALQEEETYTFYGKIVTHPKFGL
QFQAEHFKKEIPTTKEGIIQYLSSDLFEGIGKKTAEEIVKKLGDSAINKILADASVLYDVPRLSKKKADTLAGALQRHQG
LEQIMISLNQFGFGPQLSMKIYQAYESETLEKIQENPYQLVKDVEGIGFGKADELGSRMGLSGNHPERVKAAILYTLETT
CLSEGHTYIETEQLIIDTQSLLNQSAREGQRITEMDAANAIIALGENKDIVIEDGRCYFPSLFYAEQNVAKRVKHIASQT
EYDDQFPESEFLLALGELEERMNVQYAPSQKEAIQKALSSPMLLLTGGPGTGKTTVIRGIVELYGELHGVSLDPSAYKKD
EAFPVVLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTHTEDQPIEGKLLIIDEASMLDIWLANHLFKAIPDHIQI
IIVGDEDQLPSVGPGQVLRDLLASKVIPTVRLTDIYRQAEGSSIVELAHQMKNGLLPNNLTAPTKDRSFIRCGGSQIKEV
VEKVVANALKKGYTAKDIQVLAPMYRGKAGINELNVMLQDILNPPKEKRRELKFGDVVFRTGDKILQLVNQPENNVFNGD
IGEITSIFYAKENTEKEDMAVVNFDGNEMTFTKKDFNQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAIT
RAKKFLILCGEEEALEWGVKNNDATVRQTSLKNRLSLQVEEMDAELEALQKELPFSVYDANIGMEGITPFDFMKEEQL

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=681971 M0696_RS13715 WP_248602063.1 2685067..2687463(-) (recD2) [Bacillus rugosus strain A78.1]
GTGCAGCAGCATCCGGATCAGCTTAAACTGGAGGAAGAGCCCTATTTAAAGGGGACAGTCAACACAGTCATCTATCATAA
TGAGACCAATTTATATACGGTTCTGAAAGTGAAAGTTACAGAGACCTCCGAAGCGATTGAAGATAAAGCCGTATCCGTGA
CGGGCTACTTCCCTGCGCTTCAAGAAGAAGAGACCTACACGTTTTACGGAAAGATCGTAACCCATCCAAAATTCGGGCTC
CAATTTCAGGCGGAGCATTTCAAAAAGGAGATCCCGACGACTAAGGAAGGTATCATTCAATATTTATCGAGTGATTTGTT
CGAGGGTATCGGCAAAAAAACAGCTGAAGAAATTGTGAAAAAGCTGGGCGACAGCGCGATTAATAAAATTTTGGCTGACG
CCTCAGTGCTTTATGATGTACCGAGACTGTCAAAAAAGAAAGCTGATACGCTAGCCGGCGCTTTGCAGCGGCATCAGGGA
CTTGAGCAAATCATGATTTCCCTGAATCAGTTCGGCTTTGGCCCTCAGCTGTCTATGAAAATCTATCAGGCCTATGAATC
CGAGACGCTTGAAAAGATTCAGGAAAACCCTTATCAGCTTGTGAAAGATGTAGAAGGGATCGGGTTTGGGAAAGCGGATG
AGCTTGGCAGCAGAATGGGACTTTCGGGTAATCATCCTGAGCGGGTAAAAGCCGCCATTTTGTACACGCTTGAAACGACT
TGTCTGTCAGAAGGGCATACGTACATAGAAACGGAGCAGCTGATTATCGACACCCAATCACTGTTGAACCAGTCAGCAAG
GGAAGGACAGCGCATCACAGAAATGGATGCCGCTAACGCGATTATTGCCCTTGGAGAAAATAAAGACATTGTCATAGAAG
ACGGCCGCTGTTATTTTCCATCGCTGTTTTACGCAGAACAAAACGTTGCAAAGCGTGTGAAACATATCGCAAGCCAAACC
GAATATGATGACCAGTTTCCTGAATCAGAATTTCTGCTCGCTTTAGGAGAACTGGAAGAACGGATGAATGTTCAGTATGC
CCCGAGCCAGAAGGAAGCGATTCAAAAAGCCCTTTCCTCACCAATGCTTCTTTTAACTGGAGGCCCGGGAACAGGGAAAA
CGACGGTAATCAGAGGAATTGTCGAACTATACGGAGAGCTTCACGGCGTGTCACTAGACCCGTCAGCTTATAAAAAGGAT
GAAGCTTTTCCGGTTGTATTGGCCGCACCGACAGGAAGAGCGGCGAAACGGATGAGTGAATCAACGGGTCTTCCGGCAGT
CACGATACACAGGCTGCTTGGCTGGAACGGCGCTGAAGGCTTTACCCATACAGAGGATCAGCCGATCGAAGGAAAGCTGT
TAATTATCGATGAAGCCAGCATGCTTGATATATGGCTGGCGAACCACTTGTTCAAGGCGATCCCTGATCATATTCAAATC
ATCATTGTCGGAGATGAAGATCAACTGCCTTCTGTCGGTCCGGGCCAAGTGCTGAGAGACCTTTTGGCATCTAAGGTAAT
TCCGACTGTGAGACTGACAGACATCTACCGCCAGGCTGAGGGGTCATCAATCGTTGAGCTTGCCCACCAGATGAAAAATG
GATTGCTGCCGAACAATTTGACTGCCCCGACGAAGGACCGTTCCTTTATTCGCTGCGGTGGCTCGCAAATAAAAGAAGTA
GTCGAAAAGGTTGTCGCCAATGCATTGAAAAAAGGCTATACGGCAAAGGACATACAGGTTCTCGCCCCGATGTACAGAGG
GAAAGCAGGCATCAATGAACTGAACGTGATGCTGCAGGACATCTTGAATCCTCCTAAAGAAAAACGGAGAGAATTGAAGT
TCGGAGATGTTGTCTTCAGAACGGGAGATAAAATTTTGCAGCTTGTCAATCAGCCGGAAAACAATGTGTTCAACGGAGAT
ATTGGCGAAATCACGTCGATATTTTATGCGAAGGAAAATACAGAAAAAGAAGACATGGCCGTTGTTAATTTTGACGGCAA
TGAAATGACATTTACGAAAAAAGATTTTAACCAGTTTACCCACGCGTATTGCTGCTCTATTCATAAATCGCAGGGAAGTG
AATTTCCGATTGTGGTTTTGCCTGTTGTGAAAGGCTACTATAGAATGCTCAGAAGAAACCTTCTTTATACAGCTATTACA
AGAGCAAAGAAATTTCTCATTTTATGCGGGGAAGAGGAGGCGCTGGAGTGGGGCGTAAAAAATAATGACGCAACTGTTCG
ACAAACTTCCTTGAAAAACAGGCTGTCATTACAGGTTGAGGAAATGGATGCCGAGCTTGAAGCTTTGCAAAAAGAGCTCC
CGTTCAGCGTATACGATGCCAATATTGGCATGGAAGGCATTACACCATTCGATTTTATGAAAGAAGAACAGCTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(594-664)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(681-729)

AAA domain (AAA_30)

(346-553)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

98.745

99.875

0.986