Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M0696_RS08765 Genome accession   NZ_CP096590
Coordinates   1713090..1713869 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus rugosus strain A78.1     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1708090..1718869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS08745 (M0696_08745) trmFO 1708784..1710091 (+) 1308 WP_166852985.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  M0696_RS08750 (M0696_08750) xerC 1710158..1711072 (+) 915 WP_166852982.1 tyrosine recombinase XerC -
  M0696_RS08755 (M0696_08755) clpQ 1711085..1711630 (+) 546 WP_166852979.1 ATP-dependent protease subunit ClpQ -
  M0696_RS08760 (M0696_08760) hslU 1711647..1713050 (+) 1404 WP_166852976.1 HslU--HslV peptidase ATPase subunit -
  M0696_RS08765 (M0696_08765) codY 1713090..1713869 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M0696_RS08770 (M0696_08770) flgB 1714251..1714640 (+) 390 WP_222142825.1 flagellar basal body rod protein FlgB -
  M0696_RS08775 (M0696_08775) flgC 1714640..1715092 (+) 453 WP_014113787.1 flagellar basal body rod protein FlgC -
  M0696_RS08780 (M0696_08780) fliE 1715104..1715424 (+) 321 WP_166852971.1 flagellar hook-basal body complex protein FliE -
  M0696_RS08785 (M0696_08785) fliF 1715470..1717080 (+) 1611 WP_248602690.1 flagellar basal-body MS-ring/collar protein FliF -
  M0696_RS08790 (M0696_08790) fliG 1717093..1718109 (+) 1017 WP_003220860.1 flagellar motor switch protein FliG -
  M0696_RS08795 (M0696_08795) fliH 1718102..1718854 (+) 753 WP_248602691.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=681951 M0696_RS08765 WP_003220850.1 1713090..1713869(+) (codY) [Bacillus rugosus strain A78.1]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=681951 M0696_RS08765 WP_003220850.1 1713090..1713869(+) (codY) [Bacillus rugosus strain A78.1]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAATTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGCAAACTCCTTGGATATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTTCCTGTTGAAAACAGAGACTTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGTGGCGGAGAAAGATTAGGAACACTCATTCTTTCACGTTTACAGGATC
AGTTTAATGACGATGACTTAATCCTCGCTGAATACGGCGCTACAGTTGTTGGAATGGAGATCCTGAGAGAAAAAGCAGAA
GAAATCGAAGAGGAAGCAAGAAGCAAAGCTGTCGTTCAAATGGCTATCAGTTCTCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAAGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATCGCTGATCGCGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAAAGCGCGGGTGTTATCGAGTCAAGATCATTAGGAATGAAAGGTACT
TATATCAAAGTCCTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467