Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   M0644_RS06935 Genome accession   NZ_CP096573
Coordinates   1368776..1369855 (-) Length   359 a.a.
NCBI ID   WP_315862996.1    Uniprot ID   -
Organism   Thermosynechococcus sp. B1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1363776..1374855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0644_RS06920 (M0644_06900) - 1365090..1367249 (-) 2160 WP_286625064.1 secretin N-terminal domain-containing protein -
  M0644_RS06925 (M0644_06905) - 1367344..1368066 (-) 723 WP_286625066.1 type 4a pilus biogenesis protein PilO -
  M0644_RS06930 (M0644_06910) - 1368063..1368764 (-) 702 WP_286625067.1 PilN domain-containing protein -
  M0644_RS06935 (M0644_06915) pilM 1368776..1369855 (-) 1080 WP_315862996.1 type IV pilus assembly protein PilM Machinery gene
  M0644_RS06940 (M0644_06920) - 1370119..1370673 (-) 555 WP_286625068.1 L,D-transpeptidase -
  M0644_RS06945 (M0644_06925) - 1370730..1371161 (-) 432 WP_286625069.1 hypothetical protein -
  M0644_RS06950 (M0644_06930) - 1371331..1372560 (-) 1230 WP_286625070.1 acetate/propionate family kinase -
  M0644_RS06955 (M0644_06935) comA 1372683..1374380 (+) 1698 WP_286625071.1 phospholipase D-like domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 39247.25 Da        Isoelectric Point: 4.2866

>NTDB_id=681818 M0644_RS06935 WP_315862996.1 1368776..1369855(-) (pilM) [Thermosynechococcus sp. B1]
MLGNLFAKPKQGLGIELTPERVNIVQLQRQKQGLKMTAMASVPLSEGAIEEGRIIDTTAVADAIRQGIEDKRIKQKEVIS
AIPMNEAVIRLIRLPAELPDYELREVVLMQEAPLYLPFPREEADVDYQKLGTSLDEDGIERVEILLVGTPREVTDAYINA
FTQAGLQLTALEVTNFALMRTLRDSLQQFVGEAAAIIDIGDEGTEISIVKDGIPQFNRKVPIGKERMQEAISRAMNLPPS
MGVDLIENLTVPLEPMDVTGALNPSGAAILRVLSDLADEIRRSIDFYLNQGESLEVSQLLLAGPGASIGQVDEFFSQRLN
YATTLVDPISLLGLQTLEEIPLEKRPALGTVIGLGLRGA

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=681818 M0644_RS06935 WP_315862996.1 1368776..1369855(-) (pilM) [Thermosynechococcus sp. B1]
GTGCTGGGAAATCTATTTGCAAAACCAAAGCAGGGCTTGGGGATTGAACTCACCCCAGAGCGGGTCAATATCGTACAGCT
TCAGCGGCAAAAGCAGGGTCTGAAAATGACCGCTATGGCCTCAGTGCCCTTGAGTGAAGGCGCCATTGAAGAAGGCCGCA
TCATTGACACCACCGCCGTTGCCGATGCCATCCGTCAAGGGATTGAGGATAAACGCATCAAACAAAAAGAGGTGATCAGT
GCTATTCCCATGAATGAAGCCGTGATTCGCCTGATTCGCCTGCCTGCGGAATTACCCGACTACGAATTGCGGGAAGTGGT
TCTCATGCAGGAAGCCCCACTGTACCTTCCCTTTCCCCGTGAAGAGGCCGATGTTGACTATCAAAAACTGGGAACCTCCC
TTGATGAAGATGGCATTGAGCGGGTAGAAATTTTGCTCGTGGGCACGCCCCGCGAAGTGACCGATGCCTACATCAATGCC
TTTACCCAAGCCGGTTTACAACTCACCGCCCTTGAAGTGACCAATTTTGCCCTCATGCGTACCCTGCGGGATTCACTACA
GCAGTTTGTGGGCGAAGCAGCAGCGATTATTGATATAGGCGACGAGGGCACAGAAATTAGCATCGTCAAAGATGGCATTC
CCCAGTTCAACCGCAAAGTGCCCATTGGCAAAGAACGGATGCAAGAAGCCATTAGCCGCGCCATGAACTTGCCGCCTTCG
ATGGGCGTTGACCTGATTGAGAATCTGACCGTTCCCCTAGAGCCGATGGATGTGACCGGAGCACTCAACCCCAGTGGTGC
CGCTATTTTGCGAGTGCTCTCCGATCTAGCAGACGAAATCCGCCGCTCTATTGACTTTTACCTCAACCAAGGGGAAAGTC
TAGAGGTCTCGCAGTTGCTGCTTGCCGGTCCCGGTGCCAGTATTGGTCAAGTGGATGAGTTTTTTAGTCAGCGGCTCAAC
TATGCCACCACTTTGGTTGACCCCATTAGTTTGCTGGGACTGCAAACCCTAGAAGAGATTCCCCTCGAAAAACGCCCTGC
CCTCGGCACGGTGATTGGTCTTGGTCTGCGTGGCGCTTAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Synechocystis sp. PCC 6803

50.139

100

0.504