Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA53_RS26305 Genome accession   NZ_CP109856
Coordinates   5702978..5703502 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain PALA53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5697978..5708502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA53_RS26290 (PALA53_05239) aroB 5699106..5700212 (-) 1107 WP_016253983.1 3-dehydroquinate synthase -
  PALA53_RS26295 (PALA53_05240) aroK 5700262..5700780 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA53_RS26300 (PALA53_05241) pilQ 5700792..5702924 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  PALA53_RS26305 (PALA53_05242) comL/pilP 5702978..5703502 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA53_RS26310 (PALA53_05243) pilO 5703499..5704122 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA53_RS26315 (PALA53_05244) pilN 5704119..5704715 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  PALA53_RS26320 (PALA53_05245) pilM 5704715..5705779 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA53_RS26325 (PALA53_05246) - 5705964..5708435 (+) 2472 WP_016562439.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=680957 PALA53_RS26305 WP_003116136.1 5702978..5703502(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA53]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=680957 PALA53_RS26305 WP_003116136.1 5702978..5703502(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA53]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362