Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   PALA51_RS27420 Genome accession   NZ_CP109851
Coordinates   5832446..5832970 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain PALA51     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5827446..5837970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA51_RS27405 (PALA51_05431) aroB 5828574..5829680 (-) 1107 WP_003116138.1 3-dehydroquinate synthase -
  PALA51_RS27410 (PALA51_05432) aroK 5829730..5830248 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PALA51_RS27415 (PALA51_05433) pilQ 5830260..5832392 (-) 2133 WP_003116137.1 type 4a pilus secretin PilQ Machinery gene
  PALA51_RS27420 (PALA51_05434) comL/pilP 5832446..5832970 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA51_RS27425 (PALA51_05435) pilO 5832967..5833590 (-) 624 WP_003116135.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA51_RS27430 (PALA51_05436) pilN 5833587..5834183 (-) 597 WP_003116134.1 type 4a pilus biogenesis protein PilN -
  PALA51_RS27435 (PALA51_05437) pilM 5834183..5835247 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA51_RS27440 (PALA51_05438) - 5835432..5837903 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=680857 PALA51_RS27420 WP_003116136.1 5832446..5832970(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA51]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=680857 PALA51_RS27420 WP_003116136.1 5832446..5832970(-) (comL/pilP) [Pseudomonas aeruginosa strain PALA51]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362