Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA37_RS16820 Genome accession   NZ_CP109850
Coordinates   3613514..3613939 (-) Length   141 a.a.
NCBI ID   WP_043092465.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3608514..3618939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA37_RS16800 (PALA37_03327) ileS 3608673..3611504 (+) 2832 WP_003102617.1 isoleucine--tRNA ligase -
  PALA37_RS16805 (PALA37_03328) lspA 3611497..3612006 (+) 510 WP_003094728.1 signal peptidase II -
  PALA37_RS16810 (PALA37_03329) fkpB 3611999..3612439 (+) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  PALA37_RS16815 (PALA37_03330) ispH 3612525..3613469 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  PALA37_RS16820 (PALA37_03331) comF 3613514..3613939 (-) 426 WP_043092465.1 type 4a pilus minor pilin PilE Machinery gene
  PALA37_RS16825 (PALA37_03332) pilY2 3613936..3614283 (-) 348 WP_021264112.1 type 4a fimbrial biogenesis protein PilY2 -
  PALA37_RS16830 (PALA37_03333) pilY1 3614285..3617770 (-) 3486 WP_270132241.1 type 4a pilus biogenesis protein PilY1 -
  PALA37_RS16835 (PALA37_03334) pilX 3617782..3618369 (-) 588 WP_003094700.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15236.28 Da        Isoelectric Point: 9.8398

>NTDB_id=680740 PALA37_RS16820 WP_043092465.1 3613514..3613939(-) (comF) [Pseudomonas aeruginosa strain PALA37]
MRTIQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=680740 PALA37_RS16820 WP_043092465.1 3613514..3613939(-) (comF) [Pseudomonas aeruginosa strain PALA37]
ATGAGGACAATACAGAAGGGCTTCACATTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGTATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

41.406

90.78

0.376