Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PALA37_RS14220 Genome accession   NZ_CP109850
Coordinates   3032982..3033578 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PALA37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3027982..3038578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA37_RS14210 (PALA37_02814) - 3029262..3031733 (-) 2472 WP_270135581.1 penicillin-binding protein 1A -
  PALA37_RS14215 (PALA37_02815) pilM 3031918..3032982 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PALA37_RS14220 (PALA37_02816) pilN 3032982..3033578 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PALA37_RS14225 (PALA37_02817) pilO 3033575..3034198 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PALA37_RS14230 (PALA37_02818) comL/pilP 3034195..3034719 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PALA37_RS14235 (PALA37_02819) pilQ 3034773..3036917 (+) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  PALA37_RS14240 (PALA37_02820) aroK 3036929..3037447 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=680732 PALA37_RS14220 WP_003095839.1 3032982..3033578(+) (pilN) [Pseudomonas aeruginosa strain PALA37]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=680732 PALA37_RS14220 WP_003095839.1 3032982..3033578(+) (pilN) [Pseudomonas aeruginosa strain PALA37]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369