Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   M0D58_RS14980 Genome accession   NZ_CP096203
Coordinates   3321963..3322616 (-) Length   217 a.a.
NCBI ID   WP_248391166.1    Uniprot ID   -
Organism   Chryseobacterium nepalense strain AC3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3316963..3327616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0D58_RS14960 (M0D58_14960) der 3318652..3319962 (+) 1311 WP_248391157.1 ribosome biogenesis GTPase Der -
  M0D58_RS14965 (M0D58_14965) upp 3320041..3320694 (+) 654 WP_248391160.1 uracil phosphoribosyltransferase -
  M0D58_RS14970 (M0D58_14970) - 3320683..3321372 (-) 690 WP_248391162.1 alpha/beta hydrolase -
  M0D58_RS14975 (M0D58_14975) - 3321456..3321881 (-) 426 WP_248391164.1 hypothetical protein -
  M0D58_RS14980 (M0D58_14980) comF 3321963..3322616 (-) 654 WP_248391166.1 double zinc ribbon domain-containing protein Machinery gene
  M0D58_RS14985 (M0D58_14985) - 3322721..3323104 (+) 384 WP_248391168.1 acyl-ACP thioesterase domain-containing protein -
  M0D58_RS14990 (M0D58_14990) - 3323153..3323599 (+) 447 WP_066433447.1 6-carboxytetrahydropterin synthase -
  M0D58_RS14995 (M0D58_14995) - 3323623..3324414 (+) 792 WP_248391170.1 UDP-2,3-diacylglucosamine diphosphatase -
  M0D58_RS15000 (M0D58_15000) - 3324590..3325576 (+) 987 WP_248391172.1 acyl transferase -
  M0D58_RS15005 (M0D58_15005) - 3325731..3326276 (+) 546 WP_248391174.1 hypothetical protein -
  M0D58_RS15010 (M0D58_15010) aqpZ 3326332..3327060 (-) 729 WP_248394989.1 aquaporin Z -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24963.10 Da        Isoelectric Point: 8.4807

>NTDB_id=680311 M0D58_RS14980 WP_248391166.1 3321963..3322616(-) (comF) [Chryseobacterium nepalense strain AC3]
MILDILFPNRCLGCNCIISADLLVCELCFGRIDFIHSGYFDDNLIKERCRLLFPVENTFALMQFGKENLSRKIIHELKYK
SREKAGEILAEWTTTRLDFKDQKPDLMVSVPLHPKKLKERGYNQLHVFTEKLSAFYGIPFDHDVIKRNQYSKAQALKDKQ
NRLKSENVFSVTKSITQKNILLIDDVFTTGNTIASIAWEILKAGNNTVNVLVMAMDV

Nucleotide


Download         Length: 654 bp        

>NTDB_id=680311 M0D58_RS14980 WP_248391166.1 3321963..3322616(-) (comF) [Chryseobacterium nepalense strain AC3]
ATGATTTTAGATATTTTATTTCCTAACCGTTGTCTGGGCTGCAATTGTATTATATCGGCTGATCTTCTGGTTTGTGAGCT
GTGTTTCGGCCGTATTGACTTTATCCATTCCGGTTATTTTGATGATAATTTAATTAAAGAAAGATGCAGGCTTCTTTTTC
CTGTTGAAAATACCTTTGCTTTGATGCAGTTTGGAAAAGAAAATCTCAGCAGAAAAATCATTCATGAATTAAAATACAAA
AGCAGGGAAAAAGCAGGAGAAATATTGGCAGAATGGACCACTACCCGACTTGATTTTAAAGATCAAAAGCCGGATTTGAT
GGTTTCCGTTCCGCTGCATCCCAAAAAGTTGAAAGAACGAGGATACAACCAGCTTCATGTATTTACTGAAAAACTTTCTG
CATTTTACGGAATTCCATTTGATCATGATGTAATCAAAAGAAATCAGTACTCAAAAGCACAGGCCCTAAAAGATAAACAG
AACCGGTTAAAGTCGGAAAATGTATTTTCTGTTACAAAAAGCATAACTCAAAAAAATATACTTCTTATTGATGACGTATT
CACTACCGGAAATACAATTGCTTCTATTGCATGGGAAATTCTCAAAGCGGGTAATAATACGGTAAACGTACTGGTGATGG
CGATGGATGTGTAG

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

49.537

99.539

0.493