Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PALA29_RS02495 Genome accession   NZ_CP109843
Coordinates   546768..547493 (-) Length   241 a.a.
NCBI ID   WP_004352162.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA29     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 541768..552493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA29_RS02470 (PALA29_00489) - 542240..542755 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  PALA29_RS02475 (PALA29_00490) rarD 543445..544341 (-) 897 WP_003103301.1 EamA family transporter RarD -
  PALA29_RS02480 (PALA29_00491) - 544544..545518 (-) 975 WP_023114737.1 serine/threonine protein kinase -
  PALA29_RS02485 (PALA29_00492) - 545580..546338 (-) 759 WP_023114736.1 TOBE domain-containing protein -
  PALA29_RS02490 (PALA29_00493) - 546406..546726 (-) 321 WP_003103307.1 YfiM family lipoprotein -
  PALA29_RS02495 (PALA29_00494) comF 546768..547493 (-) 726 WP_004352162.1 ComF family protein Machinery gene
  PALA29_RS02500 (PALA29_00495) - 547632..547925 (-) 294 WP_003084806.1 hypothetical protein -
  PALA29_RS02505 (PALA29_00496) - 547979..548905 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  PALA29_RS02510 (PALA29_00497) - 549023..549781 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  PALA29_RS02515 (PALA29_00498) - 549858..550106 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  PALA29_RS02520 (PALA29_00499) - 550117..551493 (+) 1377 WP_023114735.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  PALA29_RS02525 (PALA29_00500) - 551495..552373 (+) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27099.58 Da        Isoelectric Point: 11.0325

>NTDB_id=680276 PALA29_RS02495 WP_004352162.1 546768..547493(-) (comF) [Pseudomonas aeruginosa strain PALA29]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATTEHLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=680276 PALA29_RS02495 WP_004352162.1 546768..547493(-) (comF) [Pseudomonas aeruginosa strain PALA29]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCA
CCGAGCACCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)

Double zinc ribbon domain (DZR_2)

(9-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.589

100

0.386