Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   MTO69_RS00445 Genome accession   NZ_CP096199
Coordinates   96715..97416 (+) Length   233 a.a.
NCBI ID   WP_248330142.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 91715..102416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS00430 (MTO69_00430) - 92832..95150 (+) 2319 WP_248330136.1 Tex family protein -
  MTO69_RS00435 (MTO69_00435) - 95261..95731 (-) 471 WP_248330138.1 ATP-dependent Lon protease -
  MTO69_RS00440 (MTO69_00440) bioH 95821..96657 (-) 837 WP_248330140.1 pimeloyl-ACP methyl ester esterase BioH -
  MTO69_RS00445 (MTO69_00445) comF 96715..97416 (+) 702 WP_248330142.1 ComF family protein Machinery gene
  MTO69_RS00450 (MTO69_00450) nfuA 97503..98090 (+) 588 WP_248330144.1 Fe-S biogenesis protein NfuA -
  MTO69_RS00455 (MTO69_00455) nudE 98372..98932 (+) 561 WP_248330145.1 ADP compounds hydrolase NudE -
  MTO69_RS00460 (MTO69_00460) cysQ 98964..99791 (+) 828 WP_248330147.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  MTO69_RS00465 (MTO69_00465) recG 100049..102127 (-) 2079 WP_248330149.1 ATP-dependent DNA helicase RecG -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26243.43 Da        Isoelectric Point: 8.2644

>NTDB_id=680240 MTO69_RS00445 WP_248330142.1 96715..97416(+) (comF) [Vibrio sinaloensis strain YA2]
MLAQIFHKYIADLLPSHCELCLLPIQAQAQSASFCHACLAYFAPIERCQRCGLPCVGEPEQCGQCLTHPPLWQRLYCVGD
YQAPLASYVQRLKYQRQFWQADKLAKLLSPQVTEPAELITYVPLHWQRCARRGFNQSERLAHALSKQLAIPLANVFSRTR
VTRPQQGLTRTQRLDNLSDAFALTSLPNVNRVAIVDDVVTTGTTVHHLCKLLLDAGVKNVDIYCICRTPEPSS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=680240 MTO69_RS00445 WP_248330142.1 96715..97416(+) (comF) [Vibrio sinaloensis strain YA2]
ATGTTAGCGCAAATATTCCACAAATACATCGCGGACCTGTTGCCCAGCCATTGCGAGCTATGTTTGCTGCCGATACAAGC
GCAGGCGCAGTCTGCCAGTTTCTGTCACGCGTGTTTGGCTTACTTTGCGCCGATAGAGCGTTGTCAGCGCTGTGGTTTGC
CTTGTGTTGGTGAGCCGGAGCAGTGTGGCCAGTGCTTAACCCATCCCCCGCTCTGGCAGCGGCTTTATTGTGTCGGTGAT
TACCAAGCGCCGCTGGCAAGTTATGTTCAGCGGTTGAAGTATCAGCGTCAGTTCTGGCAAGCAGACAAACTGGCAAAGCT
GCTCAGTCCTCAAGTCACCGAGCCCGCCGAGCTTATCACTTATGTCCCTTTGCATTGGCAGCGCTGCGCTAGGCGTGGAT
TCAATCAAAGTGAACGTCTCGCCCACGCCCTGTCCAAGCAACTCGCTATTCCTTTAGCGAACGTGTTCTCTCGCACTCGC
GTCACGCGCCCGCAGCAAGGGCTAACTCGCACGCAGCGTTTGGATAATCTCAGCGACGCATTTGCCCTGACATCACTACC
CAATGTGAACCGAGTAGCGATTGTGGATGATGTGGTCACCACAGGCACGACCGTGCATCATTTGTGCAAATTATTGCTTG
ATGCTGGGGTGAAAAATGTCGATATTTACTGCATTTGCCGCACTCCAGAGCCATCGAGTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

53.419

100

0.536
  comF Vibrio campbellii strain DS40M4

45.833

100

0.472