Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MZN50_RS00630 Genome accession   NZ_CP096157
Coordinates   134356..136752 (+) Length   798 a.a.
NCBI ID   WP_003725983.1    Uniprot ID   A0A9P1X2N2
Organism   Listeria monocytogenes strain FSL F6-0366 (H7858)     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 129356..141752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN50_RS00610 (MZN50_00610) - 130507..131655 (+) 1149 WP_003731166.1 cysteine desulfurase family protein -
  MZN50_RS00615 (MZN50_00615) mnmA 131674..132789 (+) 1116 WP_003727410.1 tRNA 2-thiouridine(34) synthase MnmA -
  MZN50_RS00620 (MZN50_00620) - 132909..133649 (+) 741 WP_003725985.1 alpha/beta hydrolase -
  MZN50_RS00625 (MZN50_00625) - 133690..134328 (+) 639 WP_072572675.1 tetratricopeptide repeat protein -
  MZN50_RS00630 (MZN50_00630) recD2 134356..136752 (+) 2397 WP_003725983.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MZN50_RS00635 (MZN50_00635) pieS 136794..138233 (-) 1440 WP_003741021.1 two component system sensor histidine kinase PieS -
  MZN50_RS00640 (MZN50_00640) pieR 138230..138916 (-) 687 WP_003725981.1 two component system response regulator PieR -
  MZN50_RS00645 (MZN50_00645) - 139083..140582 (+) 1500 WP_003725980.1 ABC transporter permease -
  MZN50_RS00650 (MZN50_00650) - 140591..141286 (+) 696 WP_003725979.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90091.14 Da        Isoelectric Point: 4.8081

>NTDB_id=680020 MZN50_RS00630 WP_003725983.1 134356..136752(+) (recD2) [Listeria monocytogenes strain FSL F6-0366 (H7858)]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDIKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQNILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGDIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSITYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLIYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=680020 MZN50_RS00630 WP_003725983.1 134356..136752(+) (recD2) [Listeria monocytogenes strain FSL F6-0366 (H7858)]
ATGGCTGAACAAGAATCACTCGCTCTATTTAACGATACACCAGAAGAACTTTTCATGAAGGGCACGATGTTGTCCACCAT
TTTTTACAATGCCGAAAACCTCTTTTCTGTTGTACGAATATTGGTCAAAGAAACCAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACCGGTTTTTTCCCAGCGCTTCACGAGCAAGAAGTATACACTTTCTACGGGAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAGACCGGTTTCGTAAGGAAATGCCACAATCACGAGCGGGCTTAATTAATTATCTATCCGG
TGAACTTTTTAAAGGCATTGGTAAAGTCACTGCTGAAAATATTGTGGATACGATTGGCGACGATGCTATCACAAAAATTT
TATCCGATCCGAGCTTGCTAAATACAGTACCTAAGTTGCCATCTGGCGCGGCAGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGGTTGGAGCATGTGATGGTCGGATTAAACGAATATGGCTTTGGTCCGCAATTATCCATGAAAATTTTCCAGGC
CTATAAACAAAATGCGATTGAAGTGTTAGAGAATAATCCTTATAAATTGATTGAGGATATAAAAGGGATTGGTTTTCAGC
GTGCCGATGAGCTTGGACGGAAACTCGGTCTTGGCGGGAATCATCCAGAACGGCTTCGTGCTGGGATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCATGTATATATGGAGCAAGAGGTTCTGCTCGGAGAAGTAACTTATTTACTGGAAGA
AAGCGAAGGCATTCGTATTGACCAAAATATTTTAGTAGCTCAAGTAGAAAAATTAGCTGAGGAACAAAAGATTATTACGG
AAAATACACGTGTTTACATGCCATCACTCTATTATTCAGAGAGCGGCTTTGCATATCACGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAACAATTTCCGCAATCCGAATTTCTGCTAGCTCTAGGAGAATTAGAAGAACGGATTGGCGTTCACTA
CGGAGATTCGCAGCGACAGGCTTTAGAACAAGCTTTAATGTCTCCGATGCTCGTACTTACTGGTGGTCCCGGGACAGGGA
AAACAACAGTCATTAAAGGGATAGTGGAGCTTTATGCGGAACTAAATGGTGTGAGCCTTGATCCCCATGCTTACAAAGAT
GGAGCGACTTTCCCCGTTCTTCTTGCTGCTCCAACTGGCCGTGCCGCTAAACGGATGTCTGAGTCAACAGGGCTTCCTGC
GATGACCATTCACCGTTTACTTGGAATGAATGGTCAAGAACAAATGGATGATGATGCAGAAAGACTGATTGATGGACGAC
TGTTGATAGTGGATGAGATGTCAATGGTAGATATTTGGCTTGCTAATCAATTATTCCGTGCTTTACCAGCGCACATGCAA
GTGGTACTTGTTGGCGACCAAGATCAGTTGCCTTCAGTCGGACCAGGTCAAGTACTCAAAGATATTCTGCAATCTGAACA
AATTCCAACTGTAGCTCTTTCAGATATTTACCGCCAAAAGGATGGTTCTTCCATTATCGAAATGGCGCATTATATAAAAG
AAGGCATGTTGCCAGCTGATTTCACCAAAAATAGCGCCGATCGCTCCTTTTTTCATTGCACGGTAAATCAAATTGGTGAT
GTAGTCGAACAAGTGGTAAAAAATGCAAAAAACAAAGGATTTCGAGCAAAAGACATCCAAGTTTTAGCACCAATGTATCG
TGGTCCTGCAGGCATTGATATTTTAAATAAAAAACTACAAGAAATTTTCAATCCAAATGATACAGGGCGTCGTAAAGAAG
TTCAATTTGGTGACATAAAGTATCGCGTGCATGACAAAGTACTGCAATTGATTAATCAACCAGAGAAAAATGTGTTTAAC
GGTGATATTGGTGAAATTGTGTCTATTACATACGCCAAAGAAAATACCGAAAAACAAGATCTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGGCAAGAATTTAATCAATTGACCCATGCTTATTGTTGTTCGATCCATAAAGCGCAGG
GAAGTGAATTTCCGATTGTGATTATGCCGATTGTCCGCAGTTACTACCGGATGTTACGGCGCGATTTAATATACACCGGA
GTAACGCGAAGTAAACAATTTCTCATTCTTTGCGGGGAAGAAGAAGCTTTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAACGTAATACAACACTCTCTGAACGTTTAATGAGCGAAGATGTTTTATTAGAACAAATGACAAATAAACGAATTCTCA
CAGCTGAAAATATTACGGAAATTGATCCGATGATTGGAATGGAAGGGATTACTCCAGAACAATTTATGGCAGGATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.107

98.747

0.564