Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MZN49_RS06485 Genome accession   NZ_CP096154
Coordinates   1288610..1291006 (-) Length   798 a.a.
NCBI ID   WP_014930484.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FSL F2-0695     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1283610..1296006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN49_RS06465 (MZN49_06465) - 1284072..1284767 (-) 696 WP_003725979.1 ABC transporter ATP-binding protein -
  MZN49_RS06470 (MZN49_06470) - 1284776..1286281 (-) 1506 WP_070214961.1 ABC transporter permease -
  MZN49_RS06475 (MZN49_06475) pieR 1286448..1287134 (+) 687 WP_003730152.1 two component system response regulator PieR -
  MZN49_RS06480 (MZN49_06480) pieS 1287131..1288570 (+) 1440 WP_014589074.1 two component system sensor histidine kinase PieS -
  MZN49_RS06485 (MZN49_06485) recD2 1288610..1291006 (-) 2397 WP_014930484.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MZN49_RS06490 (MZN49_06490) - 1291034..1291672 (-) 639 WP_077904947.1 tetratricopeptide repeat protein -
  MZN49_RS06495 (MZN49_06495) - 1291722..1292462 (-) 741 WP_003730156.1 alpha/beta hydrolase -
  MZN49_RS06500 (MZN49_06500) mnmA 1292580..1293695 (-) 1116 WP_070241054.1 tRNA 2-thiouridine(34) synthase MnmA -
  MZN49_RS06505 (MZN49_06505) - 1293714..1294862 (-) 1149 WP_070214958.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90077.16 Da        Isoelectric Point: 4.8404

>NTDB_id=679914 MZN49_RS06485 WP_014930484.1 1288610..1291006(-) (recD2) [Listeria monocytogenes strain FSL F2-0695]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQNILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAHHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=679914 MZN49_RS06485 WP_014930484.1 1288610..1291006(-) (recD2) [Listeria monocytogenes strain FSL F2-0695]
ATGGCTGAACAAGAATCACTCGCTCTATTTAACGATACACCAGAAGAACTTTTCATGAAGGGCACGATGTTGTCCACCAT
TTTTTACAATGCCGAAAACCTCTTTTCTGTTGTACGAATATTGGTTAAAGAAACCAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACCGGCTTTTTCCCAGCGCTTCACGAGCAAGAAGTGTACACTTTCTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAGACCGGTTTCGTAAAGAAATGCCACAATCACGAGCGGGTTTAATTAATTATCTATCCGG
TGAACTTTTTAAAGGCATTGGTAAAGTCACTGCTGAAAATATTGTGGATACGATTGGCGACGATGCTATCACAAAAATTT
TATCCGATCCGAGTTTGCTAAATACAGTACCTAAGTTGCCATCTGGCGCGGCAGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGGTTGGAGCATGTGATGGTCGGATTAAACGAATATGGCTTTGGTCCACAATTATCCATGAAAATTTTTCAGGC
TTATAAACAAAATGCGATTGAAGTATTAGAAAATAACCCCTATAAATTAATTGAAGACGTAAAAGGGATTGGTTTTCAGC
GGGCCGACGAACTTGGGCGGAAACTAGGTCTTGGTGGGAATCATCCAGAACGGCTTCGTGCTGGAATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCATGTATATATGGAGCAAGAGGTTCTGCTCGGAGAAGTAACTTATTTACTGGAAGA
AAGCGAAGGCATTCGTATTGACCAAAATATTTTAGTGGCTCAAGTAGAAAAATTAGCCGAGGAACAAAAGATTATCACGG
AAAATACACGTGTTTACATGCCATCGCTCTATTATTCAGAGAGCGGCTTTGCACATCACGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAACAATTTCCGCAATCCGAATTTCTGCTAGCTCTAGGTGAATTAGAAGAACGGATTGGAGTTCACTA
CGGAGATTCTCAACGTCAGGCGTTAGAACAAGCGTTAATGTCTCCAATGCTCGTACTTACTGGTGGTCCCGGAACAGGGA
AAACAACAGTTATTAAAGGGATAGTAGAGTTGTATGCGGAGCTAAATGGTGTAAGTCTTGATCCGCATGCCTATAAAGAT
GGAGCAACGTTTCCTGTGCTTCTTGCCGCTCCAACAGGTCGCGCTGCTAAACGAATGTCAGAATCAACTGGACTCCCGGC
GATGACTATTCACCGTCTGCTTGGAATGAACGGCCAGGAACAAATGGATGATGATGCAGAGCGGCTTATTGATGGACGAC
TGTTGATTGTAGATGAGATGTCGATGGTTGATATTTGGCTTGCTAACCAATTATTCCGTGCTTTACCAGCGCATATGCAA
GTCGTACTCGTTGGTGACCAAGATCAATTGCCGTCAGTTGGACCAGGTCAAGTACTCAAAGATATTCTTCAATCAGAACA
AATTCCAACTGTAGCCCTTTCAGATATTTATCGCCAAAAAGATGGCTCTTCCATTATCGAAATGGCGCATTATATAAAAG
AGGGAATGTTGCCAGCTGATTTCACCAAAAATAGCGCCGATCGCTCTTTTTTCCATTGTACGGTAAACCAAATTGGCGAT
GTAGTCGAACAAGTGGTGAAAAATGCAAAAAATAAAGGATTTCGAGCAAAAGACATCCAAGTTTTAGCGCCGATGTATCG
AGGTCCAGCAGGGATTGACATTTTAAATAAAAAACTACAAGAAATCTTCAATCCAAATGATACCGGTCGTCGGAAAGAAG
TTCAATTTGGCGAAATAAAATATCGCGTGCATGATAAAGTACTACAATTAATTAACCAACCGGAAAAGAATGTGTTTAAT
GGGGACATTGGTGAAATTGTGTCTATTATCTATGCGAAAGAAAATACCGAAAAACAAGATTTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGACAAGAATTTAATCAATTGACCCATGCTTACTGTTGTTCGATTCATAAAGCACAGG
GAAGTGAATTTCCGATTGTGATTATGCCGATTGTTCGCAGTTACTACCGGATGTTACGCCGCGATTTACTTTACACAGGG
GTAACGAGGAGTAAACAGTTTCTTATTCTTTGCGGGGAAGAAGAAGCATTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAGCGCAATACAACACTCTCTGAACGTTTAATGAGCGAAGACGTATTATTAGAGCAAATGACGAATAAACGTATTCTTA
CTGCTGAAAATATTACTGAAATAGATCCGATGATTGGAATGGAAGGGATTACGCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

AAA domain (AAA_30)

(347-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.234

98.747

0.565