Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MZN46_RS08690 Genome accession   NZ_CP096153
Coordinates   1756888..1759284 (-) Length   798 a.a.
NCBI ID   WP_070212110.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FSL F2-0501     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1751888..1764284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN46_RS08670 (MZN46_08675) - 1752350..1753045 (-) 696 WP_003725979.1 ABC transporter ATP-binding protein -
  MZN46_RS08675 (MZN46_08680) - 1753054..1754559 (-) 1506 WP_003730151.1 ABC transporter permease -
  MZN46_RS08680 (MZN46_08685) pieR 1754726..1755412 (+) 687 WP_003730152.1 two component system response regulator PieR -
  MZN46_RS08685 (MZN46_08690) pieS 1755409..1756848 (+) 1440 WP_014589074.1 two component system sensor histidine kinase PieS -
  MZN46_RS08690 (MZN46_08695) recD2 1756888..1759284 (-) 2397 WP_070212110.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MZN46_RS08695 (MZN46_08700) - 1759312..1759950 (-) 639 WP_077904947.1 tetratricopeptide repeat protein -
  MZN46_RS08700 (MZN46_08705) - 1759991..1760731 (-) 741 WP_003730156.1 alpha/beta hydrolase -
  MZN46_RS08705 (MZN46_08710) mnmA 1760849..1761964 (-) 1116 WP_070262560.1 tRNA 2-thiouridine(34) synthase MnmA -
  MZN46_RS08710 (MZN46_08715) - 1761983..1763131 (-) 1149 WP_012581286.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90070.13 Da        Isoelectric Point: 4.8092

>NTDB_id=679882 MZN46_RS08690 WP_070212110.1 1756888..1759284(-) (recD2) [Listeria monocytogenes strain FSL F2-0501]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQNILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDVLNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKHILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=679882 MZN46_RS08690 WP_070212110.1 1756888..1759284(-) (recD2) [Listeria monocytogenes strain FSL F2-0501]
ATGGCTGAACAAGAATCACTCGCTCTATTTAACGATACACCAGAAGAACTTTTCATGAAGGGCACGATGTTGTCCACCAT
TTTTTACAATGCCGAAAACCTCTTTTCTGTTGTGCGAATATTGGTCAAAGAAACCAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACCGGCTTTTTCCCAGCGCTTCACGAGCAAGAAGTGTACACTTTCTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAGACCGATTTCGTAAGGAAATGCCACAATCACGAGCGGGTTTAATTAATTATCTATCTGG
TGAACTTTTTAAAGGCATTGGTAAAGTCACTGCTGAAAATATTGTGGATACGATTGGCGACGATGCTATCACAAAAATTT
TATCCGATCCGAGCTTGCTAAATACAGTACCTAAGTTGCCATCTGGCGCGGCAGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGGTTGGAGCATGTGATGGTTGGATTAAACGAATATGGCTTTGGTCCACAATTATCCATGAAAATTTTTCAGGC
TTATAAACAAAATGCGATTGAAGTATTAGAAAATAACCCCTATAAATTAATTGAAGACGTAAAAGGGATTGGTTTTCAGC
GGGCCGACGAACTTGGGCGGAAACTAGGTCTTGGCGGGAATCATCCAGAACGGCTTCGTGCTGGAATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCATGTATATATGGAGCAAGAGGTTCTGCTTGGAGAAGTAACTTATTTACTGGAAGA
AAGCGAAGGCATTCGTATTGACCAAAATATTTTAGTGGCTCAAGTAGAAAAATTAGCCGAGGAACAAAAGATTATCACGG
AAAATACACGTGTTTACATGCCATCGCTCTATTATTCAGAGAGCGGCTTTGCATATCACGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAACAATTTCCGCAATCCGAATTTCTGCTAGCTCTAGGTGAATTAGAAGAACGGATTGGAGTTCACTA
CGGAGATTCTCAACGTCAAGCGTTAGAACAAGCGTTAATGTCTCCGATGCTCGTACTTACTGGTGGTCCCGGAACAGGGA
AAACAACAGTTATTAAAGGGATAGTAGAGTTGTATGCGGAGCTAAATGGTGTAAGTCTTGATCCGCATGCCTATAAAGAT
GGAGCAACGTTTCCTGTGCTTCTTGCCGCTCCAACAGGTCGCGCTGCTAAACGAATGTCAGAATCAACTGGACTCCCGGC
GATGACTATTCACCGTCTGCTTGGAATGAACGGTCAGGAACAAATGGATGATGATGCAGAGCGGCTTATTGATGGACGAC
TATTGATTGTGGATGAGATGTCGATGGTTGATATTTGGCTTGCTAACCAATTATTCCGTGCTTTACCAGCGCATATGCAA
GTCGTACTTGTTGGTGACCAAGATCAATTGCCGTCAGTTGGACCAGGTCAAGTACTCAAAGATATTCTTCAATCAGAACA
AATTCCAACCGTAGCCCTTTCAGATATTTATCGCCAAAAAGACGGCTCTTCCATTATCGAAATGGCGCATTATATAAAAG
AGGGAATGTTGCCAGCTGATTTCACCAAAAATAGCGCCGATCGCTCTTTTTTCCATTGTACGGTAAACCAAATTGGCGAT
GTAGTCGAACAAGTGGTGAAAAATGCAAAAAACAAAGGATTTCGAGCAAAAGATATCCAAGTTTTAGCGCCGATGTATCG
CGGTCCAGCAGGGATTGACGTTTTAAATAAAAAACTACAAGAAATCTTCAATCCAAATGATACCGGTCGTCGGAAAGAAG
TTCAATTTGGTGAAATAAAATATCGCGTGCATGATAAAGTACTACAATTAATTAACCAACCGGAAAAGAATGTGTTTAAT
GGGGACATTGGTGAAATTGTATCTATTATCTATGCGAAAGAAAATACCGAAAAACAAGATTTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGACAAGAATTTAATCAATTGACCCATGCTTACTGTTGTTCGATTCATAAAGCACAGG
GAAGTGAATTTCCGATAGTGATTATGCCGATTGTTCGCAGTTACTATCGGATGTTACGCCGCGATTTACTTTACACAGGG
GTAACGAGGAGTAAGCAGTTTCTTATTCTTTGCGGGGAAGAAGAAGCATTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAGCGTAATACAACACTCTCTGAACGTTTAATGAGCGAAGATGTATTATTAGAACAAATGACGAATAAACATATTCTTA
CTGCTGAAAATATTACTGAAATAGATCCGATGATTGGAATGGAAGGGATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.234

98.747

0.565