Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MZN44_RS13030 Genome accession   NZ_CP096152
Coordinates   2607944..2610340 (+) Length   798 a.a.
NCBI ID   WP_003730154.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FSL J2-0071     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2602944..2615340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN44_RS13010 (MZN44_13010) - 2604097..2605245 (+) 1149 WP_003730158.1 cysteine desulfurase family protein -
  MZN44_RS13015 (MZN44_13015) mnmA 2605264..2606379 (+) 1116 WP_003730157.1 tRNA 2-thiouridine(34) synthase MnmA -
  MZN44_RS13020 (MZN44_13020) - 2606497..2607237 (+) 741 WP_003730156.1 alpha/beta hydrolase -
  MZN44_RS13025 (MZN44_13025) - 2607278..2607916 (+) 639 WP_077906998.1 tetratricopeptide repeat protein -
  MZN44_RS13030 (MZN44_13030) recD2 2607944..2610340 (+) 2397 WP_003730154.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MZN44_RS13035 (MZN44_13035) pieS 2610380..2611819 (-) 1440 WP_014589074.1 two component system sensor histidine kinase PieS -
  MZN44_RS13040 (MZN44_13040) pieR 2611816..2612502 (-) 687 WP_003730152.1 two component system response regulator PieR -
  MZN44_RS13045 (MZN44_13045) - 2612669..2614174 (+) 1506 WP_003730151.1 ABC transporter permease -
  MZN44_RS13050 (MZN44_13050) - 2614183..2614878 (+) 696 WP_003725979.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90105.22 Da        Isoelectric Point: 4.8404

>NTDB_id=679850 MZN44_RS13030 WP_003730154.1 2607944..2610340(+) (recD2) [Listeria monocytogenes strain FSL J2-0071]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDVITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQNILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAHHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=679850 MZN44_RS13030 WP_003730154.1 2607944..2610340(+) (recD2) [Listeria monocytogenes strain FSL J2-0071]
ATGGCTGAACAAGAATCACTCGCTCTATTTAACGATACACCAGAAGAACTTTTCATGAAGGGCACGATGTTGTCCACCAT
TTTTTACAATGCCGAAAACCTCTTTTCTGTTGTACGAATATTGGTCAAAGAAACCAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACCGGCTTTTTCCCAGCGCTTCACGAGCAAGAAGTGTACACTTTCTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAGACCGGTTTCGTAAAGAAATGCCACAATCACGAGCGGGCTTAATTAATTATCTATCCGG
TGAACTTTTTAAAGGCATTGGTAAAGTCACTGCTGAAAATATTGTGGATACGATTGGCGACGATGTTATCACAAAAATTT
TATCCGATCCGAGTTTGCTAAATACAGTACCTAAGTTGCCATCTGGCGCGGCAGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGGTTGGAGCATGTGATGGTCGGATTAAACGAATATGGCTTTGGCCCACAATTATCCATGAAAATTTTTCAGGC
TTATAAACAAAATGCGATTGAAGTATTAGAAAATAACCCCTATAAATTAATTGAAGACGTAAAAGGGATTGGTTTTCAAC
GGGCCGACGAACTTGGGCGGAAACTAGGTCTTGGTGGGAATCATCCAGAACGGCTTCGTGCTGGGATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCATGTATATATGGAGCAAGAGGTTCTGCTCGGAGAAGTAACTTATTTACTGGAAGA
AAGCGAAGGCATTCGTATTGACCAAAATATTTTAGTGGCTCAAGTAGAAAAATTAGCTGAGGAACAAAAGATTATCACGG
AAAATACACGTGTTTACATGCCATCGCTCTATTATTCAGAGAGCGGCTTTGCACATCACGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAACAATTTCCGCAATCCGAATTTCTGCTAGCTCTAGGTGAATTAGAAGAACGGATTGGAGTTCACTA
CGGAGATTCTCAACGTCAGGCGTTAGAACAAGCGTTAATGTCTCCGATGCTCGTACTTACTGGTGGTCCTGGAACAGGGA
AAACAACAGTTATTAAAGGGATAGTAGAGTTGTATGCGGAGCTAAATGGTGTAAGTCTTGATCCGCATGCCTATAAAGAT
GGAGCAACGTTTCCTGTGCTTCTTGCCGCTCCAACAGGTCGCGCTGCTAAACGAATGTCAGAATCAACTGGACTCCCGGC
GATGACTATTCACCGTCTGCTTGGAATGAACGGTCAGGAACAAATGGATGATGATGCAGAGCGGCTTATTGATGGACGAC
TATTGATTGTAGATGAGATGTCGATGGTTGATATTTGGCTTGCTAACCAATTATTTCGTGCTTTACCAGCGCATATGCAA
GTTGTACTCGTTGGTGACCAAGATCAATTGCCGTCAGTTGGACCAGGTCAAGTACTCAAAGATATTCTTCAATCAGAACA
AATTCCAACCGTAGCCCTTTCAGATATTTATCGCCAAAAGGATGGCTCTTCCATTATCGAAATGGCGCACTATATAAAAG
AGGGTATGTTGCCAGCTGATTTCACCAAAAATAGCGCCGATCGCTCTTTTTTCCATTGTACGGTAAACCAAATTGGCGAT
GTAGTCGAACAAGTGGTGAAAAATGCCAAAAACAAAGGATTTCGAGCAAAAGATATCCAAGTTTTAGCGCCGATGTATCG
CGGTCCAGCAGGGATTGACATTTTAAATAAAAAACTACAAGAAATCTTCAATCCAAATGATACCGGTCGTCGGAAAGAAG
TTCAATTTGGCGAAATAAAATATCGCGTGCATGATAAGGTACTACAATTAATTAACCAACCGGAAAAGAATGTGTTTAAT
GGGGACATAGGTGAAATTGTGTCTATTATCTATGCGAAAGAAAATACCGAAAAACAAGATTTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGACAAGAATTTAATCAATTGACCCATGCTTACTGTTGTTCGATTCATAAAGCACAGG
GAAGTGAATTTCCGATAGTGATTATGCCGATTGTTCGCAGTTATTACCGGATGTTACGCCGCGATTTACTTTACACAGGG
GTAACGAGGAGTAAGCAGTTTCTTATTCTTTGCGGGGAAGAAGAAGCATTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAGCGAAATACAACACTCTCTGAACGTTTAATGAGCGAAGACGTATTATTAGAGCAAATGACGAATAAACGTATTCTTA
CTGCTGAAAATATTACTGAAATAGATCCGATGATTGGAATGGAAGGGATTACTCCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.107

98.747

0.564