Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   MZN51_RS04560 Genome accession   NZ_CP096151
Coordinates   877425..879821 (-) Length   798 a.a.
NCBI ID   WP_070039403.1    Uniprot ID   A0AB74NHK8
Organism   Listeria monocytogenes strain FSL W1-0110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 872425..884821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN51_RS04540 (MZN51_04540) - 872887..873582 (-) 696 WP_003725979.1 ABC transporter ATP-binding protein -
  MZN51_RS04545 (MZN51_04545) - 873591..875096 (-) 1506 WP_070039399.1 ABC transporter permease -
  MZN51_RS04550 (MZN51_04550) pieR 875263..875949 (+) 687 WP_070034082.1 two component system response regulator PieR -
  MZN51_RS04555 (MZN51_04555) pieS 875946..877385 (+) 1440 WP_014589074.1 two component system sensor histidine kinase PieS -
  MZN51_RS04560 (MZN51_04560) recD2 877425..879821 (-) 2397 WP_070039403.1 ATP-dependent RecD-like DNA helicase Machinery gene
  MZN51_RS04565 (MZN51_04565) - 879849..880487 (-) 639 WP_077952952.1 tetratricopeptide repeat protein -
  MZN51_RS04570 (MZN51_04570) - 880528..881268 (-) 741 WP_070039407.1 alpha/beta hydrolase -
  MZN51_RS04575 (MZN51_04575) mnmA 881386..882501 (-) 1116 WP_070039410.1 tRNA 2-thiouridine(34) synthase MnmA -
  MZN51_RS04580 (MZN51_04580) - 882520..883668 (-) 1149 WP_070039412.1 cysteine desulfurase family protein -

Sequence

Protein


Download         Length: 798 a.a.        Molecular weight: 90103.20 Da        Isoelectric Point: 4.8098

>NTDB_id=679792 MZN51_RS04560 WP_070039403.1 877425..879821(-) (recD2) [Listeria monocytogenes strain FSL W1-0110]
MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKETNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAK
FGQQFKADRFRKEMPQSRAGLINYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDVKGIGFQRADELGRKLGLGGNHPERLRAGILFML
DSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQNILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQ
TEYQEQFPQSEFLLALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVSLDPHAYKD
GATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLIDGRLLIVDEMSMVDIWLANQLFRALPAHMQ
VVLVGDQDQLPSVGPGQVLKDILQSEQIPTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGD
VVEQVVKNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGEIKYRVHDKVLQLINQPEKNVFN
GDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLTHAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLLYTG
VTRSKQFLILCGEEEAFRMGIERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG

Nucleotide


Download         Length: 2397 bp        

>NTDB_id=679792 MZN51_RS04560 WP_070039403.1 877425..879821(-) (recD2) [Listeria monocytogenes strain FSL W1-0110]
ATGGCTGAACAAGAATCACTCGCTCTATTTAACGATACACCAGAAGAACTTTTCATGAAGGGCACGATGTTGTCCACCAT
TTTTTACAATGCCGAAAACCTCTTTTCTGTTGTACGAATATTGGTCAAAGAAACCAATGCGGATTGGGACGAAAAAGATA
TTATCGTAACCGGCTTTTTCCCAGCACTTCACGAGCAAGAAGTGTACACTTTCTACGGAAAAATGCAGGAACATGCTAAA
TTTGGTCAACAGTTTAAAGCAGACCGGTTTCGTAAGGAAATGCCACAATCACGAGCGGGCTTAATTAATTATCTATCCGG
TGAACTTTTTAAAGGCATTGGTAAAGTCACTGCTGAAAATATTGTGGATACGATTGGCGACGATGCTATCACAAAAATTT
TATCAGATCCGAGTTTGCTAAATACAGTACCTAAGTTGCCATCTGGCGCGGCAGAAAGTTTGCTTGCTTCCCTTAGAGAA
AATCAAGGGTTGGAGCACGTGATGGTCGGATTAAACGAATATGGCTTTGGTCCACAATTATCCATGAAAATTTTTCAGGC
TTATAAACAAAATGCGATTGAAGTATTAGAAAATAACCCTTATAAATTAATTGAAGACGTAAAAGGGATTGGTTTTCAGC
GGGCCGACGAACTTGGGCGGAAACTAGGTCTTGGTGGGAATCATCCAGAACGGCTTCGTGCTGGGATTTTATTTATGTTA
GATTCGGTTTGTATGCAACAAGGTCATGTATATATGGAGCAAGAGGTTCTACTCGGAGAAGTAACTTATTTACTGGAAGA
AAGCGAAGGCATTCGTATTGACCAAAATATTTTAGTGGCTCAAGTAGAAAAATTAGCCGAGGAACAAAAGATTATCACGG
AAAATACACGTGTTTACATGCCATCGCTCTATTATTCAGAGAGCGGCTTTGCATATCACGTGAAGCGAATGCTTAAACAA
ACAGAATACCAAGAACAATTTCCGCAATCCGAATTTCTGCTAGCTCTAGGTGAATTAGAAGAACGGATTGGAGTTCACTA
CGGAGATTCTCAACGTCAGGCGTTAGAACAAGCGTTAATGTCTCCGATGCTCGTACTTACTGGTGGTCCCGGAACAGGGA
AAACAACAGTTATTAAAGGGATAGTAGAGTTGTATGCGGAGCTAAATGGTGTAAGTCTTGATCCGCATGCCTATAAAGAT
GGAGCAACGTTTCCTGTGCTTCTTGCCGCTCCAACAGGTCGCGCTGCTAAACGAATGTCAGAGTCAACAGGACTCCCGGC
GATGACTATTCACCGTCTGCTTGGAATGAACGGTCAGGAACAAATGGATGATGATGCAGAGCGGCTTATTGATGGACGAC
TGTTGATTGTAGATGAGATGTCGATGGTTGATATTTGGCTTGCTAACCAATTATTCCGTGCTTTACCAGCGCATATGCAA
GTCGTACTCGTTGGCGATCAAGATCAATTGCCGTCAGTTGGACCAGGTCAAGTACTCAAAGATATTCTTCAATCAGAACA
AATTCCAACCGTAGCCCTTTCAGATATTTATCGCCAAAAGGATGGTTCTTCCATTATCGAAATGGCGCACTATATAAAAG
AGGGTATGTTGCCAGCTGATTTCACCAAAAATAGCGCCGATCGCTCTTTTTTTCATTGTACGGTAAACCAAATTGGCGAT
GTAGTCGAACAAGTGGTGAAAAATGCAAAAAACAAAGGATTTCGAGCAAAAGATATCCAAGTTTTAGCGCCGATGTATCG
CGGTCCAGCAGGGATTGACATTTTAAATAAAAAACTACAAGAAATCTTCAATCCAAATGATACCGGTCGTCGGAAAGAAG
TTCAATTTGGCGAAATAAAATATCGCGTGCATGATAAAGTACTACAATTAATTAACCAACCGGAAAAGAATGTGTTTAAT
GGGGACATTGGTGAAATTGTGTCTATTATCTACGCGAAAGAAAATACCGAAAAACAAGATTTGATTGTCGTTCAATTTGA
CCAAACAGAGGTTTCTTACTATAGACAAGAATTTAATCAATTGACCCATGCTTACTGTTGTTCGATTCATAAAGCACAGG
GAAGTGAATTTCCGATTGTGATTATGCCGATTGTTCGCAGTTATTACCGGATGCTACGCCGCGATTTACTTTACACAGGG
GTAACGAGGAGTAAACAGTTTCTTATTCTTTGCGGGGAAGAAGAAGCATTTCGAATGGGGATAGAACGAATTGATGAAAA
TAAGCGCAATACAACACTCTCTGAACGTTTGATGAGCGAAGATGTATTATTAGAACAAATGACGAATAAGCGAATTCTTA
CTGCTGAAAATATTACTGAAATAGATCCGATGATTGGAATGGAAGGGATTACACCAGAACAATTTATGGCAGGATGA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(595-666)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(683-731)

AAA domain (AAA_30)

(347-554)

Helix-hairpin-helix containing domain (HHH_RecD2)

(160-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.234

98.747

0.565